Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2862

Experiment: Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)
3,579,840	-		BT2861	0.31	-1.5
3,579,840	-		BT2861	0.31	-2.7
3,579,840	-		BT2861	0.31	-0.4
3,579,902	+		BT2861	0.37	-1.0
3,579,903	-		BT2861	0.37	+0.8
3,579,917	-		BT2861	0.38	-0.9
3,579,952	+		BT2861	0.41	-0.9
3,579,953	-		BT2861	0.41	+0.1
3,579,973	+		BT2861	0.42	-0.3
3,579,995	+		BT2861	0.44	+0.5
3,579,995	+		BT2861	0.44	-1.9
3,579,996	-		BT2861	0.44	-0.9
3,579,996	-		BT2861	0.44	-0.9
3,580,004	+		BT2861	0.45	-1.6
3,580,158	-		BT2861	0.58	-1.3
3,580,167	-		BT2861	0.59	-0.9
3,580,177	-		BT2861	0.60	+0.8
3,580,184	+		BT2861	0.60	-0.5
3,580,209	+		BT2861	0.62	-1.1
3,580,302	+		BT2861	0.70	-2.3
3,580,336	+		BT2861	0.73	-3.6
3,580,336	+		BT2861	0.73	-0.9
3,580,361	-		BT2861	0.75	-0.9
3,580,363	-		BT2861	0.75	-1.5
3,580,374	-		BT2861	0.76	-1.8
3,580,374	-		BT2861	0.76	-1.2
3,580,457	-		BT2861	0.83	+1.4
3,580,457	-		BT2861	0.83	-2.5
3,580,536	+		BT2861	0.90	-1.6
3,580,562	-				+0.1
3,580,583	-				-0.5
3,580,583	-				-1.1
3,580,603	-				+0.8
3,580,687	-				-0.8
3,580,738	+				-1.3
3,580,763	-				-1.5
3,580,778	-				+0.1
3,580,801	+				-0.3
3,580,899	+				-1.3
3,580,980	+				+2.4
3,581,138	+		BT2862	0.13	-1.2
3,581,144	+		BT2862	0.13	+0.1
3,581,146	+		BT2862	0.13	-0.9
3,581,146	+		BT2862	0.13	-0.9
3,581,168	-		BT2862	0.14	-0.9
3,581,203	-		BT2862	0.15	+0.1
3,581,226	+		BT2862	0.16	+1.1
3,581,226	+		BT2862	0.16	-0.3
3,581,269	-		BT2862	0.18	-1.2
3,581,303	+		BT2862	0.20	-2.2
3,581,377	+		BT2862	0.23	-0.9
3,581,378	-		BT2862	0.23	-1.7
3,581,379	+		BT2862	0.23	-0.9
3,581,379	+		BT2862	0.23	-0.9
3,581,451	+		BT2862	0.26	+1.7
3,581,454	+		BT2862	0.26	+0.1
3,581,454	+		BT2862	0.26	-0.5
3,581,502	+		BT2862	0.28	-1.8
3,581,503	-		BT2862	0.28	-1.7
3,581,658	+		BT2862	0.35	-1.9
3,581,659	-		BT2862	0.35	-0.5
3,581,661	+		BT2862	0.35	-0.9
3,581,662	-		BT2862	0.35	-1.9
3,581,662	-		BT2862	0.35	-1.9
3,581,662	-		BT2862	0.35	+0.1
3,581,684	-		BT2862	0.36	-0.3
3,581,710	+		BT2862	0.37	+0.7
3,581,710	+		BT2862	0.37	+0.1
3,581,710	+		BT2862	0.37	-1.3
3,581,719	-		BT2862	0.37	-1.5
3,581,751	-		BT2862	0.39	-0.3
3,581,754	+		BT2862	0.39	-1.5
3,581,776	-		BT2862	0.40	+0.1
3,581,808	+		BT2862	0.41	-1.5
3,581,808	+		BT2862	0.41	-0.5
3,581,809	-		BT2862	0.41	+0.1
3,581,857	+		BT2862	0.43	-0.9
3,581,864	-		BT2862	0.43	-2.7
3,581,868	-		BT2862	0.43	-0.4
3,581,868	-		BT2862	0.43	+0.1
3,581,882	-		BT2862	0.44	-0.9
3,581,899	+		BT2862	0.45	-0.7
3,581,905	+		BT2862	0.45	-1.5
3,581,905	+		BT2862	0.45	-0.9
3,581,970	+		BT2862	0.48	-1.7
3,581,972	+		BT2862	0.48	-1.3
3,581,972	+		BT2862	0.48	-0.5
3,582,009	+		BT2862	0.49	-1.3
3,582,010	-		BT2862	0.49	+0.1
3,582,013	+		BT2862	0.50	-0.9
3,582,021	+		BT2862	0.50	-0.9
3,582,023	+		BT2862	0.50	-0.9
3,582,153	+		BT2862	0.56	-2.7
3,582,228	+		BT2862	0.59	-1.1
3,582,279	-		BT2862	0.61	-1.2
3,582,288	+		BT2862	0.61	-0.7
3,582,296	-		BT2862	0.62	-0.9
3,582,298	-		BT2862	0.62	-0.5
3,582,300	-		BT2862	0.62	-1.6
3,582,303	+		BT2862	0.62	-1.3
3,582,316	-		BT2862	0.62	+1.1
3,582,316	-		BT2862	0.62	-1.5
3,582,319	-		BT2862	0.63	-0.7
3,582,358	-		BT2862	0.64	-1.2
3,582,376	+		BT2862	0.65	-1.5
3,582,376	+		BT2862	0.65	-1.0
3,582,377	-		BT2862	0.65	+0.7
3,582,452	-		BT2862	0.68	-0.5
3,582,465	+		BT2862	0.69	-1.5
3,582,526	-		BT2862	0.71	-2.5
3,582,576	+		BT2862	0.73	-1.5
3,582,612	+		BT2862	0.75	-0.7
3,582,613	-		BT2862	0.75	+1.7
3,582,670	+		BT2862	0.77	-1.0
3,582,671	-		BT2862	0.77	-0.9
3,582,693	+		BT2862	0.78	-0.9
3,582,694	-		BT2862	0.78	-1.9
3,582,785	-		BT2862	0.82	-0.8
3,582,854	+		BT2862	0.85	-0.9
3,582,855	-		BT2862	0.85	-0.4
3,582,891	-		BT2862	0.87	+1.6
3,583,036	-				+0.3
3,583,042	+				-1.5
3,583,045	+				-1.9
3,583,046	-				+1.1
3,583,059	+				-1.5
3,583,086	+				-3.1
3,583,086	+				-2.0
3,583,086	+				-0.9
3,583,087	-				-1.5
3,583,117	-				-1.5
3,583,152	-				+0.1
3,583,176	+				-0.9
3,583,177	-				-1.5
3,583,206	-				+1.1
3,583,229	-				-1.1
3,583,239	+				-1.3
3,583,247	+				-0.9
3,583,256	+				-0.7
3,583,261	+				-0.4
3,583,342	+		BT2863	0.13	-0.9
3,583,342	+		BT2863	0.13	-1.6
3,583,349	+		BT2863	0.14	+0.1
3,583,349	+		BT2863	0.14	-1.6
3,583,350	-		BT2863	0.14	-1.7
3,583,353	+		BT2863	0.14	-1.3
3,583,354	-		BT2863	0.15	+0.1
3,583,355	+		BT2863	0.15	-3.9
3,583,381	-		BT2863	0.18	-2.5
3,583,392	+		BT2863	0.19	-1.8
3,583,425	+		BT2863	0.23	-1.8
3,583,426	-		BT2863	0.24	-1.9
3,583,426	-		BT2863	0.24	-0.9
3,583,541	+		BT2863	0.38	-1.9
3,583,583	-		BT2863	0.43	-2.5
3,583,589	+		BT2863	0.44	-1.9
3,583,590	-		BT2863	0.44	-0.9
3,583,658	+		BT2863	0.53	+0.8
3,583,676	-		BT2863	0.55	-1.3
3,583,676	-		BT2863	0.55	-0.9
3,583,697	-		BT2863	0.58	-0.1
3,583,739	+		BT2863	0.63	-2.4
3,583,744	+		BT2863	0.63	+0.1
3,583,784	+		BT2863	0.68	-1.0
3,583,802	+		BT2863	0.71	-0.5
3,583,874	-		BT2863	0.80	-1.5
3,583,874	-		BT2863	0.80	+0.1
3,584,019	+				-1.4
3,584,038	-				+0.6
3,584,038	-				-0.6
3,584,117	+				+0.1
3,584,141	+				-0.7
3,584,161	+				-1.3
3,584,164	+				-0.9
3,584,170	+				-0.9
3,584,178	+				-0.9