Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1089

Experiment: Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)
1,375,301	+				+1.5
1,375,504	+		BT1088	0.24	-0.5
1,375,515	-		BT1088	0.25	+0.5
1,375,792	+		BT1088	0.55	-1.3
1,376,092	+		BT1088	0.87	-0.6
1,376,212	+				-2.0
1,376,419	+		BT1089	0.21	-0.5
1,376,421	+		BT1089	0.22	-2.0
1,376,421	+		BT1089	0.22	-2.0
1,376,422	-		BT1089	0.22	-1.6
1,376,422	-		BT1089	0.22	-2.0
1,376,479	-		BT1089	0.30	-2.0
1,376,527	+		BT1089	0.37	-1.0
1,376,583	+		BT1089	0.45	-1.0
1,376,584	-		BT1089	0.45	-1.6
1,376,600	+		BT1089	0.48	-1.0
1,376,681	+		BT1089	0.60	-2.9
1,376,701	-		BT1089	0.63	-0.0
1,376,779	+		BT1089	0.74	-1.0
1,376,807	-		BT1089	0.78	-0.0
1,376,809	-		BT1089	0.78	-2.6
1,376,833	+		BT1089	0.82	+0.3
1,376,848	-		BT1089	0.84	-1.0
1,376,920	-				-0.0
1,376,942	+				-1.0
1,376,990	+				-1.5
1,377,009	+				-1.0
1,377,033	-				-1.4
1,377,068	+				-0.9
1,377,105	-				-0.0
1,377,156	+				-1.0
1,377,237	+		BT1090	0.23	-0.6
1,377,238	-		BT1090	0.23	-1.0
1,377,242	+		BT1090	0.23	-2.0
1,377,242	+		BT1090	0.23	-0.0
1,377,288	-		BT1090	0.29	-0.0
1,377,331	-		BT1090	0.34	-1.2
1,377,374	+		BT1090	0.39	-0.0
1,377,613	+		BT1090	0.68	-2.0
1,377,727	+		BT1090	0.81	-1.6
1,377,727	+		BT1090	0.81	-2.4
1,377,728	-		BT1090	0.81	-1.9
1,377,728	-		BT1090	0.81	-0.8
1,377,758	+		BT1090	0.85	-0.5
1,377,771	+		BT1090	0.87	-1.6
1,377,876	+				-0.6
1,377,938	+				-0.6