Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4112 and BT4113 are separated by 24 nucleotides BT4113 and BT4114 are separated by 12 nucleotides
BT4112: BT4112 - hypothetical protein (NCBI ptt file), at 5,381,274 to 5,382,857
BT4112
BT4113: BT4113 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,382,882 to 5,384,741
BT4113
BT4114: BT4114 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,384,754 to 5,387,969
BT4114
Position (kb) 5382
5383
5384
5385 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5381.910 kb on - strand, within BT4112 at 5381.919 kb on + strand, within BT4112 at 5381.928 kb on - strand, within BT4112 at 5381.958 kb on - strand, within BT4112 at 5382.009 kb on - strand, within BT4112 at 5382.031 kb on + strand, within BT4112 at 5382.043 kb on - strand, within BT4112 at 5382.044 kb on + strand, within BT4112 at 5382.045 kb on - strand, within BT4112 at 5382.048 kb on - strand, within BT4112 at 5382.060 kb on + strand, within BT4112 at 5382.101 kb on + strand, within BT4112 at 5382.102 kb on - strand, within BT4112 at 5382.102 kb on - strand, within BT4112 at 5382.103 kb on + strand, within BT4112 at 5382.104 kb on - strand, within BT4112 at 5382.104 kb on - strand, within BT4112 at 5382.104 kb on - strand, within BT4112 at 5382.105 kb on + strand, within BT4112 at 5382.106 kb on - strand, within BT4112 at 5382.113 kb on + strand, within BT4112 at 5382.114 kb on - strand, within BT4112 at 5382.116 kb on + strand, within BT4112 at 5382.128 kb on + strand, within BT4112 at 5382.135 kb on + strand, within BT4112 at 5382.143 kb on + strand, within BT4112 at 5382.152 kb on + strand, within BT4112 at 5382.168 kb on + strand, within BT4112 at 5382.169 kb on - strand, within BT4112 at 5382.169 kb on - strand, within BT4112 at 5382.204 kb on + strand, within BT4112 at 5382.258 kb on - strand, within BT4112 at 5382.390 kb on - strand, within BT4112 at 5382.420 kb on + strand, within BT4112 at 5382.565 kb on - strand, within BT4112 at 5382.581 kb on - strand, within BT4112 at 5382.658 kb on + strand, within BT4112 at 5382.745 kb on - strand at 5382.745 kb on - strand at 5382.777 kb on + strand at 5382.778 kb on - strand at 5382.778 kb on - strand at 5382.780 kb on - strand at 5382.824 kb on + strand at 5382.844 kb on - strand at 5382.844 kb on - strand at 5382.883 kb on + strand at 5382.887 kb on + strand at 5382.949 kb on + strand at 5382.950 kb on - strand at 5382.955 kb on + strand at 5382.956 kb on - strand at 5382.980 kb on + strand at 5382.981 kb on - strand at 5382.988 kb on - strand at 5383.012 kb on + strand at 5383.017 kb on + strand at 5383.051 kb on + strand at 5383.102 kb on + strand, within BT4113 at 5383.102 kb on + strand, within BT4113 at 5383.177 kb on + strand, within BT4113 at 5383.178 kb on - strand, within BT4113 at 5383.179 kb on + strand, within BT4113 at 5383.179 kb on + strand, within BT4113 at 5383.180 kb on - strand, within BT4113 at 5383.180 kb on - strand, within BT4113 at 5383.229 kb on - strand, within BT4113 at 5383.235 kb on + strand, within BT4113 at 5383.235 kb on + strand, within BT4113 at 5383.241 kb on + strand, within BT4113 at 5383.358 kb on + strand, within BT4113 at 5383.358 kb on + strand, within BT4113 at 5383.359 kb on - strand, within BT4113 at 5383.397 kb on + strand, within BT4113 at 5383.398 kb on - strand, within BT4113 at 5383.471 kb on - strand, within BT4113 at 5383.501 kb on - strand, within BT4113 at 5383.520 kb on + strand, within BT4113 at 5383.520 kb on + strand, within BT4113 at 5383.522 kb on + strand, within BT4113 at 5383.522 kb on + strand, within BT4113 at 5383.523 kb on - strand, within BT4113 at 5383.601 kb on + strand, within BT4113 at 5383.605 kb on + strand, within BT4113 at 5383.656 kb on + strand, within BT4113 at 5383.656 kb on + strand, within BT4113 at 5383.706 kb on + strand, within BT4113 at 5383.741 kb on - strand, within BT4113 at 5383.743 kb on + strand, within BT4113 at 5383.778 kb on + strand, within BT4113 at 5383.782 kb on + strand, within BT4113 at 5383.816 kb on + strand, within BT4113 at 5383.821 kb on + strand, within BT4113 at 5383.821 kb on + strand, within BT4113 at 5383.821 kb on + strand, within BT4113 at 5383.853 kb on + strand, within BT4113 at 5383.909 kb on + strand, within BT4113 at 5383.937 kb on + strand, within BT4113 at 5383.995 kb on + strand, within BT4113 at 5384.007 kb on - strand, within BT4113 at 5384.091 kb on + strand, within BT4113 at 5384.092 kb on - strand, within BT4113 at 5384.099 kb on + strand, within BT4113 at 5384.132 kb on + strand, within BT4113 at 5384.269 kb on + strand, within BT4113 at 5384.270 kb on - strand, within BT4113 at 5384.270 kb on - strand, within BT4113 at 5384.288 kb on + strand, within BT4113 at 5384.339 kb on - strand, within BT4113 at 5384.386 kb on + strand, within BT4113 at 5384.433 kb on - strand, within BT4113 at 5384.482 kb on - strand, within BT4113 at 5384.482 kb on - strand, within BT4113 at 5384.495 kb on + strand, within BT4113 at 5384.509 kb on - strand, within BT4113 at 5384.516 kb on + strand, within BT4113 at 5384.528 kb on - strand, within BT4113 at 5384.528 kb on - strand, within BT4113 at 5384.571 kb on + strand at 5384.575 kb on + strand at 5384.576 kb on - strand at 5384.636 kb on + strand at 5384.636 kb on + strand at 5384.716 kb on - strand at 5384.716 kb on - strand at 5384.726 kb on - strand at 5384.727 kb on + strand at 5384.741 kb on + strand at 5384.744 kb on + strand at 5384.782 kb on + strand at 5384.809 kb on + strand at 5384.851 kb on - strand at 5384.895 kb on - strand at 5384.925 kb on + strand at 5384.979 kb on - strand at 5384.982 kb on + strand at 5384.982 kb on + strand at 5385.029 kb on - strand at 5385.029 kb on - strand at 5385.060 kb on - strand at 5385.060 kb on - strand at 5385.102 kb on - strand, within BT4114 at 5385.118 kb on - strand, within BT4114 at 5385.188 kb on + strand, within BT4114 at 5385.232 kb on + strand, within BT4114 at 5385.233 kb on - strand, within BT4114 at 5385.276 kb on - strand, within BT4114 at 5385.335 kb on + strand, within BT4114 at 5385.363 kb on + strand, within BT4114 at 5385.380 kb on + strand, within BT4114 at 5385.398 kb on - strand, within BT4114 at 5385.501 kb on + strand, within BT4114 at 5385.592 kb on + strand, within BT4114 at 5385.593 kb on - strand, within BT4114 at 5385.600 kb on + strand, within BT4114 at 5385.605 kb on + strand, within BT4114 at 5385.609 kb on + strand, within BT4114 at 5385.664 kb on + strand, within BT4114 at 5385.674 kb on + strand, within BT4114 at 5385.700 kb on - strand, within BT4114
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; autoclaved 2.5 mg/ml (C) remove 5,381,910 - BT4112 0.40 -2.0 5,381,919 + BT4112 0.41 -0.5 5,381,928 - BT4112 0.41 -1.6 5,381,958 - BT4112 0.43 -1.0 5,382,009 - BT4112 0.46 -2.0 5,382,031 + BT4112 0.48 -1.4 5,382,043 - BT4112 0.49 -1.0 5,382,044 + BT4112 0.49 -1.2 5,382,045 - BT4112 0.49 +1.0 5,382,048 - BT4112 0.49 -1.6 5,382,060 + BT4112 0.50 +0.4 5,382,101 + BT4112 0.52 -0.0 5,382,102 - BT4112 0.52 -0.0 5,382,102 - BT4112 0.52 -2.7 5,382,103 + BT4112 0.52 -0.8 5,382,104 - BT4112 0.52 -1.6 5,382,104 - BT4112 0.52 -0.0 5,382,104 - BT4112 0.52 -0.0 5,382,105 + BT4112 0.52 -0.0 5,382,106 - BT4112 0.53 -1.3 5,382,113 + BT4112 0.53 -2.3 5,382,114 - BT4112 0.53 -1.0 5,382,116 + BT4112 0.53 +1.2 5,382,128 + BT4112 0.54 -2.0 5,382,135 + BT4112 0.54 -0.0 5,382,143 + BT4112 0.55 -1.3 5,382,152 + BT4112 0.55 -1.6 5,382,168 + BT4112 0.56 -1.8 5,382,169 - BT4112 0.57 -2.0 5,382,169 - BT4112 0.57 -1.7 5,382,204 + BT4112 0.59 -1.6 5,382,258 - BT4112 0.62 -0.0 5,382,390 - BT4112 0.70 -1.0 5,382,420 + BT4112 0.72 -1.1 5,382,565 - BT4112 0.82 -1.5 5,382,581 - BT4112 0.83 -1.0 5,382,658 + BT4112 0.87 -1.1 5,382,745 - -1.0 5,382,745 - -0.2 5,382,777 + -0.4 5,382,778 - -1.8 5,382,778 - -0.6 5,382,780 - -0.4 5,382,824 + -0.0 5,382,844 - -2.1 5,382,844 - -1.8 5,382,883 + -1.5 5,382,887 + -1.1 5,382,949 + -2.2 5,382,950 - -1.0 5,382,955 + -0.4 5,382,956 - +1.3 5,382,980 + -0.0 5,382,981 - -1.0 5,382,988 - +0.3 5,383,012 + -2.8 5,383,017 + +1.0 5,383,051 + +1.0 5,383,102 + BT4113 0.12 -0.0 5,383,102 + BT4113 0.12 -1.6 5,383,177 + BT4113 0.16 -1.6 5,383,178 - BT4113 0.16 -1.0 5,383,179 + BT4113 0.16 -1.2 5,383,179 + BT4113 0.16 -1.1 5,383,180 - BT4113 0.16 -0.0 5,383,180 - BT4113 0.16 -1.2 5,383,229 - BT4113 0.19 -1.0 5,383,235 + BT4113 0.19 -0.0 5,383,235 + BT4113 0.19 +1.0 5,383,241 + BT4113 0.19 -1.2 5,383,358 + BT4113 0.26 -0.0 5,383,358 + BT4113 0.26 -2.0 5,383,359 - BT4113 0.26 -1.0 5,383,397 + BT4113 0.28 -2.3 5,383,398 - BT4113 0.28 -1.6 5,383,471 - BT4113 0.32 -2.0 5,383,501 - BT4113 0.33 -2.1 5,383,520 + BT4113 0.34 -1.0 5,383,520 + BT4113 0.34 -1.2 5,383,522 + BT4113 0.34 -0.9 5,383,522 + BT4113 0.34 +0.3 5,383,523 - BT4113 0.34 -3.0 5,383,601 + BT4113 0.39 -1.0 5,383,605 + BT4113 0.39 -2.2 5,383,656 + BT4113 0.42 +0.6 5,383,656 + BT4113 0.42 -0.9 5,383,706 + BT4113 0.44 -0.4 5,383,741 - BT4113 0.46 -1.4 5,383,743 + BT4113 0.46 -1.0 5,383,778 + BT4113 0.48 -0.0 5,383,782 + BT4113 0.48 -2.3 5,383,816 + BT4113 0.50 -1.0 5,383,821 + BT4113 0.50 -3.0 5,383,821 + BT4113 0.50 -0.0 5,383,821 + BT4113 0.50 -1.4 5,383,853 + BT4113 0.52 -2.3 5,383,909 + BT4113 0.55 -3.3 5,383,937 + BT4113 0.57 -1.3 5,383,995 + BT4113 0.60 -2.3 5,384,007 - BT4113 0.60 +1.0 5,384,091 + BT4113 0.65 +0.4 5,384,092 - BT4113 0.65 +1.0 5,384,099 + BT4113 0.65 -2.3 5,384,132 + BT4113 0.67 -0.3 5,384,269 + BT4113 0.75 -0.0 5,384,270 - BT4113 0.75 -2.6 5,384,270 - BT4113 0.75 -1.3 5,384,288 + BT4113 0.76 -1.0 5,384,339 - BT4113 0.78 -0.4 5,384,386 + BT4113 0.81 -1.8 5,384,433 - BT4113 0.83 -0.0 5,384,482 - BT4113 0.86 -0.0 5,384,482 - BT4113 0.86 -1.0 5,384,495 + BT4113 0.87 -0.0 5,384,509 - BT4113 0.87 -2.1 5,384,516 + BT4113 0.88 -1.6 5,384,528 - BT4113 0.88 -0.0 5,384,528 - BT4113 0.88 -1.0 5,384,571 + -1.0 5,384,575 + -0.1 5,384,576 - -0.0 5,384,636 + -3.0 5,384,636 + -1.2 5,384,716 - -1.0 5,384,716 - -1.3 5,384,726 - -1.0 5,384,727 + -0.3 5,384,741 + -1.6 5,384,744 + -2.0 5,384,782 + -1.5 5,384,809 + -3.9 5,384,851 - -1.2 5,384,895 - -1.9 5,384,925 + -0.7 5,384,979 - -1.0 5,384,982 + -0.0 5,384,982 + -1.6 5,385,029 - -0.0 5,385,029 - -0.0 5,385,060 - -1.4 5,385,060 - -2.2 5,385,102 - BT4114 0.11 -0.0 5,385,118 - BT4114 0.11 -0.0 5,385,188 + BT4114 0.13 +1.0 5,385,232 + BT4114 0.15 +1.0 5,385,233 - BT4114 0.15 -1.9 5,385,276 - BT4114 0.16 -1.6 5,385,335 + BT4114 0.18 -2.6 5,385,363 + BT4114 0.19 -0.0 5,385,380 + BT4114 0.19 -0.6 5,385,398 - BT4114 0.20 -0.7 5,385,501 + BT4114 0.23 -0.4 5,385,592 + BT4114 0.26 -0.4 5,385,593 - BT4114 0.26 -0.8 5,385,600 + BT4114 0.26 -0.5 5,385,605 + BT4114 0.26 -0.0 5,385,609 + BT4114 0.27 -2.3 5,385,664 + BT4114 0.28 -0.0 5,385,674 + BT4114 0.29 -1.4 5,385,700 - BT4114 0.29 -2.0
Or see this region's nucleotide sequence