Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2512

Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
3,134,948	+		BT2510	0.61	-1.0
3,134,981	-		BT2510	0.64	-2.6
3,134,995	+		BT2510	0.66	-0.6
3,134,996	-		BT2510	0.66	-1.3
3,135,011	+		BT2510	0.67	+0.3
3,135,116	+		BT2510	0.78	-0.4
3,135,116	+		BT2510	0.78	-0.3
3,135,117	-		BT2510	0.78	-1.6
3,135,120	+		BT2510	0.78	-1.1
3,135,120	+		BT2510	0.78	-1.3
3,135,120	+		BT2510	0.78	-2.2
3,135,159	-		BT2510	0.82	-1.0
3,135,173	+		BT2510	0.83	-0.9
3,135,189	-				-1.0
3,135,192	+		BT2510	0.85	-1.6
3,135,193	-		BT2510	0.85	-0.5
3,135,193	-		BT2510	0.85	+0.3
3,135,243	+				-1.4
3,135,336	+				-1.2
3,135,352	+				+0.0
3,135,353	-				-0.3
3,135,357	+				-1.3
3,135,410	+				+1.0
3,135,472	-				-1.9
3,135,475	-				-0.9
3,135,489	-		BT2511	0.12	-2.3
3,135,527	+		BT2511	0.21	+0.0
3,135,628	+		BT2511	0.45	+0.3
3,135,629	-		BT2511	0.45	-1.6
3,135,654	+		BT2511	0.51	-0.4
3,135,659	+		BT2511	0.53	+0.6
3,135,660	-		BT2511	0.53	-1.4
3,135,660	-		BT2511	0.53	-0.7
3,135,663	+		BT2511	0.54	-1.3
3,135,702	+		BT2511	0.63	+0.4
3,135,703	-		BT2511	0.63	+0.0
3,135,703	-		BT2511	0.63	-1.5
3,135,704	+		BT2511	0.63	-1.3
3,135,705	-		BT2511	0.64	-1.3
3,135,705	-		BT2511	0.64	-0.8
3,135,713	+		BT2511	0.65	-2.0
3,135,870	+				-1.3
3,135,883	-				+0.0
3,135,889	-				+1.6
3,135,902	+				+0.0
3,135,903	-				+0.0
3,135,903	-				-1.1
3,135,951	-				-1.0
3,136,020	+				+0.0
3,136,109	+		BT2512	0.13	+0.0
3,136,126	-		BT2512	0.13	-1.0
3,136,126	-		BT2512	0.13	+0.2
3,136,143	-		BT2512	0.14	-0.6
3,136,146	+		BT2512	0.14	-1.6
3,136,146	+		BT2512	0.14	-0.6
3,136,147	-		BT2512	0.14	-1.0
3,136,151	+		BT2512	0.15	-1.6
3,136,214	+		BT2512	0.18	-1.2
3,136,214	+		BT2512	0.18	-3.0
3,136,215	-		BT2512	0.18	-1.2
3,136,304	+		BT2512	0.22	+2.3
3,136,305	-		BT2512	0.23	-0.7
3,136,313	+		BT2512	0.23	-3.0
3,136,314	-		BT2512	0.23	-0.6
3,136,314	-		BT2512	0.23	+0.4
3,136,332	+		BT2512	0.24	-0.4
3,136,336	-		BT2512	0.24	-1.0
3,136,336	-		BT2512	0.24	-1.5
3,136,413	+		BT2512	0.28	-2.6
3,136,429	+		BT2512	0.29	-2.0
3,136,430	-		BT2512	0.29	-0.6
3,136,460	+		BT2512	0.30	-0.4
3,136,460	+		BT2512	0.30	-0.6
3,136,466	+		BT2512	0.31	+0.0
3,136,523	+		BT2512	0.34	-1.6
3,136,577	-		BT2512	0.36	-0.9
3,136,577	-		BT2512	0.36	-1.7
3,136,583	+		BT2512	0.37	-1.2
3,136,583	+		BT2512	0.37	+0.2
3,136,627	+		BT2512	0.39	-1.6
3,136,644	-		BT2512	0.40	-0.8
3,136,658	+		BT2512	0.41	+0.0
3,136,658	+		BT2512	0.41	-1.8
3,136,658	+		BT2512	0.41	-1.1
3,136,671	+		BT2512	0.41	-1.8
3,136,785	-		BT2512	0.47	-2.0
3,136,788	-		BT2512	0.47	-1.0
3,136,810	+		BT2512	0.48	-1.6
3,136,867	+		BT2512	0.51	-1.0
3,136,947	-		BT2512	0.55	-1.9
3,136,956	+		BT2512	0.56	-1.6
3,137,035	+		BT2512	0.60	+0.6
3,137,035	+		BT2512	0.60	-1.2
3,137,035	+		BT2512	0.60	-0.8
3,137,036	-		BT2512	0.60	-1.3
3,137,161	-		BT2512	0.66	+0.0
3,137,191	-		BT2512	0.68	-1.4
3,137,246	+		BT2512	0.71	+1.3
3,137,260	-		BT2512	0.71	+0.0
3,137,307	+		BT2512	0.74	+0.3
3,137,414	+		BT2512	0.79	-2.4
3,137,417	+		BT2512	0.79	-1.2
3,137,429	+		BT2512	0.80	-0.4
3,137,510	-		BT2512	0.84	-1.3
3,137,526	-		BT2512	0.85	+0.0
3,137,530	-		BT2512	0.85	-3.0
3,137,557	+		BT2512	0.86	-1.2
3,137,573	+		BT2512	0.87	+0.0
3,137,574	-		BT2512	0.87	-2.0
3,137,574	-		BT2512	0.87	-1.0
3,137,630	-				-1.3
3,137,667	+				-1.6
3,137,668	-				-0.6
3,137,698	-				-0.8
3,137,789	+				+0.0
3,137,805	-				-1.7
3,137,805	-				-1.0
3,137,822	+				-1.6
3,137,906	+				+0.0
3,137,911	-				-2.0
3,137,930	+				-1.3
3,137,930	+				-1.6
3,137,932	+				-1.7
3,137,988	-				-1.4
3,137,988	-				+0.6
3,137,990	-				+1.0
3,137,990	-				-1.6
3,137,991	+				-2.0
3,138,002	-				-1.0
3,138,005	+				-1.0
3,138,008	+				+1.0
3,138,009	-				-1.6
3,138,010	+				-1.7
3,138,020	-				-1.0
3,138,022	-				-1.7
3,138,023	+				+0.0
3,138,102	+				-1.2
3,138,105	-				-1.1
3,138,110	+				+0.0
3,138,138	+		BT2513	0.10	-0.5
3,138,161	-		BT2513	0.12	-1.0
3,138,227	-		BT2513	0.16	-0.5
3,138,227	-		BT2513	0.16	-1.0
3,138,242	-		BT2513	0.17	-1.6
3,138,305	+		BT2513	0.22	+1.0
3,138,306	-		BT2513	0.22	-2.8
3,138,366	-		BT2513	0.26	-1.0
3,138,489	+		BT2513	0.34	-1.0
3,138,514	+		BT2513	0.36	+1.0
3,138,514	+		BT2513	0.36	-0.4
3,138,555	+		BT2513	0.39	-1.0
3,138,604	+		BT2513	0.42	+0.0
3,138,605	-		BT2513	0.42	+0.0
3,138,682	-		BT2513	0.48	-0.4
3,138,703	+		BT2513	0.49	+0.6
3,138,704	-		BT2513	0.49	-0.2
3,138,704	-		BT2513	0.49	+0.0
3,138,735	-		BT2513	0.51	-2.5
3,138,752	+		BT2513	0.53	+0.0
3,138,753	-		BT2513	0.53	-1.1
3,138,753	-		BT2513	0.53	-1.5
3,138,754	+		BT2513	0.53	+0.0
3,138,754	+		BT2513	0.53	+0.0
3,138,754	+		BT2513	0.53	+1.0
3,138,755	-		BT2513	0.53	-1.7
3,138,755	-		BT2513	0.53	-0.9
3,138,757	+		BT2513	0.53	+0.7
3,138,790	+		BT2513	0.55	-0.2