Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2503

Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
3,126,765	+		BT2502	0.21	+0.6
3,126,772	-		BT2502	0.22	+1.3
3,126,839	-		BT2502	0.27	-1.0
3,126,963	+		BT2502	0.38	-0.4
3,126,964	-		BT2502	0.38	-1.3
3,127,021	-		BT2502	0.42	-1.0
3,127,042	-		BT2502	0.44	-0.7
3,127,045	-		BT2502	0.45	+0.7
3,127,158	-		BT2502	0.54	-1.0
3,127,197	+		BT2502	0.57	-1.0
3,127,220	+		BT2502	0.59	-0.9
3,127,220	+		BT2502	0.59	-0.0
3,127,236	-		BT2502	0.60	-1.1
3,127,262	+		BT2502	0.63	-0.0
3,127,293	-		BT2502	0.65	-1.0
3,127,293	-				-1.7
3,127,298	-		BT2502	0.66	-0.6
3,127,312	+		BT2502	0.67	-1.0
3,127,318	-		BT2502	0.67	-1.9
3,127,370	+		BT2502	0.72	-1.4
3,127,370	+		BT2502	0.72	-1.4
3,127,371	-		BT2502	0.72	-0.8
3,127,382	+		BT2502	0.73	-1.3
3,127,382	+		BT2502	0.73	-3.2
3,127,473	-		BT2502	0.80	-0.3
3,127,504	+		BT2502	0.83	-1.2
3,127,504	+		BT2502	0.83	-2.0
3,127,509	-		BT2502	0.83	-1.0
3,127,518	+		BT2502	0.84	-0.0
3,127,518	+		BT2502	0.84	-0.4
3,127,518	+		BT2502	0.84	-1.6
3,127,545	-		BT2502	0.86	-1.0
3,127,548	+		BT2502	0.86	-2.1
3,127,566	+		BT2502	0.88	-1.7
3,127,611	+				-0.0
3,127,634	-				+0.5
3,127,645	-				-1.0
3,127,661	-				+0.4
3,127,668	+				-1.0
3,127,691	-				-0.3
3,127,693	-				-0.6
3,127,696	+				-2.0
3,127,880	+		BT2503	0.15	-0.7
3,127,880	+		BT2503	0.15	-1.6
3,127,887	-		BT2503	0.16	-1.0
3,127,887	-		BT2503	0.16	-1.2
3,127,932	+		BT2503	0.20	-1.0
3,127,932	+		BT2503	0.20	-0.7
3,127,932	+		BT2503	0.20	-1.0
3,127,933	-		BT2503	0.20	-0.8
3,127,977	-		BT2503	0.25	-2.8
3,127,982	+		BT2503	0.25	-1.6
3,127,983	-		BT2503	0.25	-2.0
3,128,034	+		BT2503	0.30	-1.5
3,128,034	+		BT2503	0.30	-0.0
3,128,038	+		BT2503	0.31	-0.7
3,128,038	+		BT2503	0.31	-0.0
3,128,039	-				-0.0
3,128,039	-		BT2503	0.31	+0.7
3,128,043	+		BT2503	0.31	-1.8
3,128,044	-		BT2503	0.31	-0.3
3,128,083	+		BT2503	0.35	-0.0
3,128,083	+		BT2503	0.35	-0.0
3,128,083	+		BT2503	0.35	-1.6
3,128,084	-		BT2503	0.35	-0.2
3,128,084	-		BT2503	0.35	-0.0
3,128,168	-		BT2503	0.44	-2.0
3,128,168	-		BT2503	0.44	-1.0
3,128,171	+		BT2503	0.44	-0.0
3,128,171	+		BT2503	0.44	-2.0
3,128,172	-		BT2503	0.44	-0.7
3,128,208	+		BT2503	0.47	-2.0
3,128,271	+		BT2503	0.54	-1.6
3,128,272	-		BT2503	0.54	+0.2
3,128,274	-		BT2503	0.54	-2.0
3,128,276	-		BT2503	0.54	+0.3
3,128,276	-		BT2503	0.54	-0.5
3,128,276	-		BT2503	0.54	-1.2
3,128,279	+		BT2503	0.54	-2.6
3,128,280	-		BT2503	0.55	-0.6
3,128,280	-		BT2503	0.55	-1.5
3,128,348	+		BT2503	0.61	-0.0
3,128,349	-		BT2503	0.61	-1.0
3,128,349	-		BT2503	0.61	-1.9
3,128,377	+		BT2503	0.64	-0.0
3,128,377	+		BT2503	0.64	-1.6
3,128,377	+		BT2503	0.64	-2.3
3,128,378	-		BT2503	0.64	-0.7
3,128,378	-		BT2503	0.64	-1.0
3,128,409	+		BT2503	0.67	-2.0
3,128,409	+		BT2503	0.67	-2.0
3,128,454	+		BT2503	0.72	+1.6
3,128,468	+		BT2503	0.73	-0.3
3,128,670	+				+1.0
3,128,698	-				-1.6
3,128,724	+				-1.1
3,128,725	-				-1.6
3,128,726	+				-1.5
3,128,726	+				-1.0
3,128,726	+				-1.0
3,128,727	-				-1.2
3,128,730	+				+1.0
3,128,769	+				-1.0
3,128,834	-				-0.6
3,128,870	+		BT2504	0.14	-1.6
3,128,875	+		BT2504	0.15	-1.2
3,128,875	+		BT2504	0.15	+1.6
3,128,914	+		BT2504	0.21	-1.8
3,128,924	-		BT2504	0.22	-2.0
3,128,987	-		BT2504	0.31	-0.7
3,128,998	+		BT2504	0.33	-1.2
3,129,070	+		BT2504	0.43	-2.2
3,129,159	-		BT2504	0.57	-2.0
3,129,166	+		BT2504	0.58	-1.4
3,129,174	-		BT2504	0.59	-1.0
3,129,207	+		BT2504	0.64	+0.6
3,129,274	+		BT2504	0.73	-0.5
3,129,276	+		BT2504	0.74	-1.3
3,129,310	+		BT2504	0.79	-0.4
3,129,310	+		BT2504	0.79	+1.6
3,129,314	-		BT2504	0.79	+0.2
3,129,321	+		BT2504	0.80	-2.0
3,129,345	+		BT2504	0.84	-1.0
3,129,361	+		BT2504	0.86	-0.6
3,129,443	+				+0.0
3,129,454	+				+0.0
3,129,455	-				+0.0
3,129,455	-				-2.0
3,129,455	-				+0.0
3,129,459	+				-1.6
3,129,460	-				+0.0
3,129,539	-				+0.0
3,129,569	+				-2.3
3,129,623	+				-1.1