Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2392

Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
2,983,664	-		BT2391	0.86	-1.2
2,983,755	+		BT2391	0.88	-1.0
2,983,781	+		BT2391	0.89	+0.3
2,983,781	+		BT2391	0.89	-1.0
2,983,782	-		BT2391	0.89	-1.0
2,983,782	-		BT2391	0.89	+0.4
2,983,933	-				+0.0
2,983,943	+				-1.2
2,983,947	+				+0.4
2,983,993	+				-2.1
2,983,993	+				-1.0
2,983,993	+				-2.0
2,983,994	-				-0.8
2,984,075	+				-1.8
2,984,095	+				-1.0
2,984,099	+				-0.4
2,984,099	+				-0.5
2,984,099	+				-2.0
2,984,099	+				-1.0
2,984,100	-				-1.6
2,984,115	-				+1.0
2,984,115	-				+1.0
2,984,118	+				-1.1
2,984,118	+				-2.2
2,984,118	+				-1.0
2,984,129	+				+0.0
2,984,135	+				-1.8
2,984,136	-				-1.0
2,984,149	-				-0.6
2,984,149	-				-0.6
2,984,156	+				-1.4
2,984,157	-				-1.7
2,984,159	-				-1.2
2,984,159	-				-1.0
2,984,173	+				-1.0
2,984,184	-				-0.7
2,984,186	+				-1.0
2,984,187	-				-1.6
2,984,202	+				+0.0
2,984,254	+				-2.9
2,984,254	+				-0.3
2,984,254	+				-1.6
2,984,255	-				+0.8
2,984,255	-				-1.1
2,984,260	+				-1.6
2,984,295	+				-0.2
2,984,345	+				-2.1
2,984,346	-				-2.7
2,984,347	+				-1.7
2,984,347	+				-1.5
2,984,347	+				-1.5
2,984,368	-				+0.0
2,984,388	+				+0.0
2,984,389	-				-0.6
2,984,401	+				-3.2
2,984,439	+				+0.0
2,984,440	-				-1.0
2,984,440	-				-1.0
2,984,440	-				+0.0
2,984,441	+				-1.1
2,984,442	-				-1.4
2,984,442	-				-0.6
2,984,442	-				-1.6
2,984,442	-				+0.0
2,984,443	+				-1.3
2,984,468	-				-1.4
2,984,568	+				-0.3
2,984,624	+				-1.6
2,984,660	-				-1.0
2,984,662	+				-2.0
2,984,705	+				-0.7
2,984,705	+				-1.0
2,984,732	+				-2.0
2,984,732	+				-1.6
2,984,752	+		BT2392	0.11	-0.7
2,984,753	-		BT2392	0.11	+0.0
2,984,753	-		BT2392	0.11	+0.0
2,984,876	+		BT2392	0.20	-0.9
2,984,876	+		BT2392	0.20	-2.0
2,984,876	+		BT2392	0.20	-1.0
2,984,877	-		BT2392	0.20	-0.9
2,984,920	+		BT2392	0.23	-1.3
2,984,979	+		BT2392	0.28	-1.6
2,984,980	-		BT2392	0.28	-2.8
2,984,987	-		BT2392	0.28	+0.0
2,985,002	+		BT2392	0.30	-1.1
2,985,008	-		BT2392	0.30	-1.8
2,985,078	+		BT2392	0.35	-2.6
2,985,082	+		BT2392	0.36	-2.1
2,985,082	+		BT2392	0.36	+0.0
2,985,082	+		BT2392	0.36	-2.0
2,985,082	+		BT2392	0.36	-1.6
2,985,083	-		BT2392	0.36	-1.6
2,985,083	-		BT2392	0.36	-0.8
2,985,083	-		BT2392	0.36	-1.2
2,985,088	+		BT2392	0.36	-0.6
2,985,088	+		BT2392	0.36	-1.0
2,985,093	-		BT2392	0.37	-1.1
2,985,106	+		BT2392	0.37	-1.0
2,985,107	-		BT2392	0.38	-1.8
2,985,112	+		BT2392	0.38	-2.0
2,985,172	+		BT2392	0.42	-1.0
2,985,173	-		BT2392	0.43	-1.6
2,985,203	-		BT2392	0.45	-1.8
2,985,203	-		BT2392	0.45	-1.7
2,985,279	-		BT2392	0.51	-2.7
2,985,279	-		BT2392	0.51	-0.6
2,985,339	-		BT2392	0.55	-1.0
2,985,376	+		BT2392	0.58	-1.9
2,985,464	+		BT2392	0.65	-1.6
2,985,471	+		BT2392	0.65	-1.6
2,985,471	+		BT2392	0.65	+0.0
2,985,473	+		BT2392	0.65	+0.0
2,985,474	-		BT2392	0.65	-1.0
2,985,501	+		BT2392	0.67	-1.8
2,985,502	-		BT2392	0.67	-1.8
2,985,516	-		BT2392	0.68	-1.2
2,985,516	-		BT2392	0.68	-1.6
2,985,516	-		BT2392	0.68	+1.0
2,985,519	+		BT2392	0.69	-2.3
2,985,520	-		BT2392	0.69	-1.0
2,985,520	-		BT2392	0.69	-0.1
2,985,525	+		BT2392	0.69	-1.2
2,985,526	-		BT2392	0.69	-1.0
2,985,542	+		BT2392	0.70	-1.0
2,985,598	+		BT2392	0.75	-1.6
2,985,598	+		BT2392	0.75	-4.3
2,985,599	-		BT2392	0.75	-1.6
2,985,618	+		BT2392	0.76	-1.6
2,985,619	-		BT2392	0.76	-1.4
2,985,674	+		BT2392	0.80	-1.0
2,985,715	+		BT2392	0.84	-1.8
2,985,718	-		BT2392	0.84	+1.6
2,985,718	-		BT2392	0.84	-1.0
2,985,734	+		BT2392	0.85	-1.0
2,985,735	-		BT2392	0.85	-2.1
2,985,792	-		BT2392	0.89	-1.4
2,985,807	+				-1.4
2,985,937	+				-1.0
2,985,971	+				-2.3
2,985,971	+				+0.7
2,986,016	+				-0.5
2,986,061	+				+0.0
2,986,098	-				+0.0
2,986,098	-				-1.6
2,986,098	-				-0.6
2,986,105	-				-1.6
2,986,129	-				-1.7
2,986,130	+				+0.0
2,986,138	-				-0.4
2,986,167	-				-1.9
2,986,207	-				-1.2
2,986,251	+				-1.5
2,986,251	+				-0.8
2,986,252	-				-1.5
2,986,253	+				+0.0
2,986,299	-		BT2393	0.11	-0.6
2,986,299	-		BT2393	0.11	-1.6
2,986,303	-		BT2393	0.11	+0.0
2,986,317	+		BT2393	0.12	+0.0
2,986,331	+		BT2393	0.12	-1.8
2,986,616	+		BT2393	0.22	+0.0
2,986,616	+		BT2393	0.22	-1.6
2,986,617	-		BT2393	0.22	-2.7
2,986,696	-		BT2393	0.24	-1.3
2,986,696	-		BT2393	0.24	+0.0
2,986,708	+		BT2393	0.25	-1.2
2,986,708	+		BT2393	0.25	-1.2
2,986,709	-		BT2393	0.25	-1.5
2,986,709	-		BT2393	0.25	+1.0
2,986,729	+		BT2393	0.25	-1.7
2,986,741	+		BT2393	0.26	-1.6
2,986,742	-		BT2393	0.26	-1.5
2,986,778	+		BT2393	0.27	+0.0
2,986,848	-		BT2393	0.29	+0.0
2,986,849	+		BT2393	0.29	-2.4
2,986,878	-		BT2393	0.30	-0.7
2,986,889	+		BT2393	0.30	-1.5
2,986,890	-		BT2393	0.31	-1.2
2,986,894	-		BT2393	0.31	+0.0
2,986,913	+		BT2393	0.31	+0.0