Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4111

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
5,374,830	+		BT4110	0.43	-1.1
5,374,830	+		BT4110	0.43	-2.2
5,374,848	+		BT4110	0.44	-0.0
5,374,849	-		BT4110	0.44	-0.0
5,374,849	-		BT4110	0.44	-1.1
5,374,849	-		BT4110	0.44	+1.0
5,374,935	-		BT4110	0.50	-1.6
5,374,935	-		BT4110	0.50	-0.0
5,374,941	-		BT4110	0.50	-1.5
5,375,000	+		BT4110	0.54	-0.7
5,375,001	-		BT4110	0.54	-1.0
5,375,078	+		BT4110	0.59	-1.3
5,375,112	+		BT4110	0.61	-1.0
5,375,113	-		BT4110	0.61	-0.0
5,375,253	-		BT4110	0.69	-0.4
5,375,256	+		BT4110	0.70	+1.0
5,375,257	-		BT4110	0.70	-1.0
5,375,257	-		BT4110	0.70	-0.4
5,375,277	+		BT4110	0.71	-1.6
5,375,292	+		BT4110	0.72	-2.6
5,375,332	+		BT4110	0.74	-0.7
5,375,352	+		BT4110	0.76	-1.3
5,375,355	-		BT4110	0.76	+1.0
5,375,361	-		BT4110	0.76	-1.0
5,375,418	+		BT4110	0.80	-2.5
5,375,419	-		BT4110	0.80	-1.0
5,375,467	+		BT4110	0.83	+1.0
5,375,467	+		BT4110	0.83	-1.2
5,375,468	-		BT4110	0.83	-1.6
5,375,468	-		BT4110	0.83	-0.0
5,375,506	+		BT4110	0.85	+0.4
5,375,507	-		BT4110	0.85	-2.2
5,375,535	-		BT4110	0.87	-0.8
5,375,601	+				-1.4
5,375,742	+				-0.0
5,375,754	-				-0.0
5,375,762	-				-1.3
5,375,780	-				-2.7
5,375,805	+				-0.0
5,375,806	-				-2.6
5,375,806	-				-0.7
5,375,809	-				+2.0
5,375,815	-				-0.6
5,375,827	-				-1.0
5,375,833	-				-1.4
5,375,859	+				-1.9
5,376,017	+				-0.1
5,376,039	-				-2.0
5,376,075	-				-0.0
5,376,075	-				-1.0
5,376,103	-				-1.4
5,376,187	+				-2.5
5,376,187	+				-1.0
5,376,188	-				+1.0
5,376,188	-				-1.4
5,376,188	-				+1.0
5,376,192	-				-1.0
5,376,193	+				-0.0
5,376,290	+		BT4111	0.11	-1.0
5,376,291	-		BT4111	0.11	-1.4
5,376,291	-		BT4111	0.11	-1.4
5,376,308	-		BT4111	0.11	-0.7
5,376,308	-		BT4111	0.11	-1.3
5,376,415	-		BT4111	0.13	-0.7
5,376,443	+		BT4111	0.14	-1.8
5,376,444	-		BT4111	0.14	-0.8
5,376,444	-		BT4111	0.14	-0.0
5,376,555	-		BT4111	0.16	-0.0
5,376,611	-		BT4111	0.18	-1.6
5,376,617	-		BT4111	0.18	-1.0
5,376,617	-		BT4111	0.18	-2.6
5,376,640	+		BT4111	0.18	-1.7
5,376,640	+		BT4111	0.18	+0.5
5,376,641	-		BT4111	0.18	-2.0
5,376,700	+		BT4111	0.20	-0.4
5,376,707	+		BT4111	0.20	-1.3
5,376,707	+		BT4111	0.20	-0.0
5,376,762	+		BT4111	0.21	-1.2
5,376,780	+		BT4111	0.21	-1.5
5,376,781	-		BT4111	0.21	-0.0
5,376,869	-		BT4111	0.23	-2.0
5,376,872	-		BT4111	0.23	-1.5
5,376,926	-		BT4111	0.25	-0.0
5,376,926	-		BT4111	0.25	-1.5
5,376,928	-		BT4111	0.25	-2.7
5,376,928	-		BT4111	0.25	-1.4
5,376,928	-		BT4111	0.25	-1.6
5,376,933	+		BT4111	0.25	-0.0
5,376,933	+		BT4111	0.25	-1.0
5,376,995	+		BT4111	0.26	-1.0
5,377,039	-		BT4111	0.27	-0.0
5,377,039	-		BT4111	0.27	-0.8
5,377,057	+		BT4111	0.27	-1.3
5,377,081	+		BT4111	0.28	-2.0
5,377,082	-		BT4111	0.28	-2.3
5,377,108	-		BT4111	0.29	-1.0
5,377,157	+		BT4111	0.30	+0.5
5,377,309	+		BT4111	0.33	-1.6
5,377,309	+		BT4111	0.33	-0.6
5,377,316	-		BT4111	0.33	+1.0
5,377,420	+		BT4111	0.35	-1.4
5,377,421	-				+1.5
5,377,427	+		BT4111	0.36	-0.5
5,377,462	+		BT4111	0.36	-1.6
5,377,466	+		BT4111	0.37	-2.0
5,377,466	+		BT4111	0.37	-2.0
5,377,466	+		BT4111	0.37	-0.7
5,377,467	-		BT4111	0.37	-1.0
5,377,467	-		BT4111	0.37	-1.0
5,377,489	-		BT4111	0.37	-2.0
5,377,490	+		BT4111	0.37	-0.0
5,377,490	+		BT4111	0.37	-1.4
5,377,491	-		BT4111	0.37	+1.5
5,377,499	+		BT4111	0.37	-0.0
5,377,499	+		BT4111	0.37	-2.8
5,377,519	+		BT4111	0.38	-1.0
5,377,553	+		BT4111	0.38	-1.0
5,377,604	-		BT4111	0.40	-0.0
5,377,688	-		BT4111	0.41	-0.0
5,377,688	-		BT4111	0.41	-1.3
5,377,736	-		BT4111	0.42	-0.6
5,377,782	+		BT4111	0.43	-0.8
5,377,782	+		BT4111	0.43	-1.1
5,377,789	+		BT4111	0.44	-0.0
5,377,790	-		BT4111	0.44	-1.6
5,378,003	-		BT4111	0.48	-0.6
5,378,047	+		BT4111	0.49	+0.4
5,378,047	+		BT4111	0.49	-0.0
5,378,048	-		BT4111	0.49	-0.6
5,378,051	-		BT4111	0.49	-1.6
5,378,086	+		BT4111	0.50	-0.0
5,378,087	-		BT4111	0.50	-2.7
5,378,108	-		BT4111	0.51	-0.0
5,378,108	-		BT4111	0.51	-0.0
5,378,168	-		BT4111	0.52	-1.6
5,378,194	+		BT4111	0.53	-2.0
5,378,221	-		BT4111	0.53	+1.0
5,378,296	+		BT4111	0.55	-2.8
5,378,347	-		BT4111	0.56	-1.0
5,378,347	-		BT4111	0.56	-0.0
5,378,347	-		BT4111	0.56	-1.6
5,378,347	-		BT4111	0.56	-0.0
5,378,352	-		BT4111	0.56	-2.0
5,378,417	+		BT4111	0.57	-2.2
5,378,419	+		BT4111	0.58	-3.0
5,378,420	-		BT4111	0.58	-2.6
5,378,443	+		BT4111	0.58	+1.5
5,378,555	+		BT4111	0.61	-0.3
5,378,556	-		BT4111	0.61	-0.3
5,378,637	+		BT4111	0.62	-0.4
5,378,682	+		BT4111	0.63	-1.6
5,378,797	+		BT4111	0.66	-1.6
5,378,807	-		BT4111	0.66	+0.5
5,378,807	-		BT4111	0.66	-1.5
5,379,004	+		BT4111	0.70	-0.0
5,379,051	-		BT4111	0.71	-0.7
5,379,051	-		BT4111	0.71	-1.6
5,379,266	-		BT4111	0.76	-1.6
5,379,341	-		BT4111	0.78	-1.6
5,379,412	+		BT4111	0.79	-1.9
5,379,511	+		BT4111	0.82	+0.5
5,379,511	+		BT4111	0.82	-0.8
5,379,522	+		BT4111	0.82	-0.6
5,379,586	-		BT4111	0.83	-1.0
5,379,643	+		BT4111	0.85	+0.5
5,379,709	+		BT4111	0.86	-0.6
5,379,724	+		BT4111	0.86	-1.3
5,379,725	-		BT4111	0.86	-0.6
5,379,730	+		BT4111	0.86	-1.6
5,379,731	-		BT4111	0.86	-1.0
5,379,742	+		BT4111	0.87	-1.0
5,379,828	-		BT4111	0.89	-1.0
5,379,884	+		BT4111	0.90	-2.0
5,379,977	-				-1.4
5,380,015	+				-2.8
5,380,025	-				-0.6
5,380,231	+				-1.0
5,380,232	-				-2.0
5,380,247	+				-0.0
5,380,249	+				+0.1
5,380,255	-				-0.5
5,380,373	+				-0.1
5,380,390	-				-0.0
5,380,520	+				-0.0
5,380,541	+				-2.4
5,380,555	+				+1.0
5,380,555	+				+0.7
5,380,556	-				-1.5
5,380,668	-				-0.5
5,380,706	-				-2.6
5,380,738	-				-1.0
5,380,782	-				-2.2
5,380,889	-				-1.0
5,380,919	+				+1.0
5,380,960	-				-1.0
5,381,003	+				-1.6
5,381,022	-				-0.3
5,381,043	+				-0.0
5,381,056	+				-0.7
5,381,098	-				-1.6
5,381,100	-				-1.6
5,381,142	-				-0.3
5,381,149	+				+1.0
5,381,150	-				-0.0
5,381,166	-				-1.7
5,381,192	-				-0.0
5,381,203	+				-2.8
5,381,240	-				-1.0
5,381,306	+				-0.9
5,381,311	-				-0.8
5,381,311	-				-2.0
5,381,311	-				-1.6