Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3559

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
4,601,719	+		BT3558	0.15	-1.0
4,601,720	-		BT3558	0.15	-1.1
4,601,729	+		BT3558	0.16	-0.4
4,601,744	-		BT3558	0.17	-0.7
4,601,762	+		BT3558	0.19	-1.0
4,601,785	-		BT3558	0.21	+2.0
4,601,818	-		BT3558	0.23	-0.9
4,601,818	-		BT3558	0.23	-1.0
4,601,849	+		BT3558	0.26	-2.3
4,601,849	+		BT3558	0.26	-1.0
4,601,956	-		BT3558	0.36	-1.2
4,601,956	-		BT3558	0.36	-2.0
4,601,956	-		BT3558	0.36	-0.5
4,601,962	-		BT3558	0.36	-0.0
4,601,962	-		BT3558	0.36	-2.0
4,601,962	-		BT3558	0.36	+1.6
4,601,963	+		BT3558	0.36	-1.4
4,601,964	-		BT3558	0.36	+1.0
4,602,001	-		BT3558	0.39	-1.0
4,602,045	+		BT3558	0.43	-1.6
4,602,045	+		BT3558	0.43	-1.9
4,602,046	-		BT3558	0.43	-0.0
4,602,046	-		BT3558	0.43	-0.6
4,602,048	-		BT3558	0.44	-1.3
4,602,084	+		BT3558	0.47	+1.0
4,602,115	+		BT3558	0.49	-1.6
4,602,115	+		BT3558	0.49	-0.6
4,602,116	-				-0.0
4,602,120	+		BT3558	0.50	-0.8
4,602,147	+		BT3558	0.52	-1.0
4,602,197	+		BT3558	0.57	-1.2
4,602,206	-		BT3558	0.57	-1.1
4,602,221	+		BT3558	0.59	-2.0
4,602,222	-		BT3558	0.59	-1.0
4,602,222	-		BT3558	0.59	-1.0
4,602,229	-		BT3558	0.59	+1.0
4,602,229	-		BT3558	0.59	-0.6
4,602,229	-		BT3558	0.59	-0.0
4,602,244	+		BT3558	0.61	-0.0
4,602,293	+		BT3558	0.65	-1.8
4,602,293	+		BT3558	0.65	-2.3
4,602,375	+		BT3558	0.72	+0.3
4,602,382	+		BT3558	0.73	-2.6
4,602,396	+		BT3558	0.74	-1.0
4,602,396	+		BT3558	0.74	-0.6
4,602,396	+		BT3558	0.74	-2.3
4,602,397	-		BT3558	0.74	+1.3
4,602,397	-		BT3558	0.74	-1.2
4,602,398	+		BT3558	0.74	-1.0
4,602,439	-		BT3558	0.78	-1.2
4,602,466	-		BT3558	0.80	-2.5
4,602,466	-		BT3558	0.80	-2.0
4,602,469	+		BT3558	0.81	-1.0
4,602,483	+		BT3558	0.82	-0.9
4,602,492	+		BT3558	0.83	-2.8
4,602,493	-		BT3558	0.83	-1.7
4,602,521	-		BT3558	0.85	-1.8
4,602,521	-		BT3558	0.85	-1.0
4,602,586	+				-1.4
4,602,586	+				-4.2
4,602,598	-				-0.7
4,602,601	-				-1.8
4,602,646	-				-1.0
4,602,652	+				-1.1
4,602,655	+				-1.0
4,602,659	-				-1.4
4,602,661	+				+1.3
4,602,681	+				-1.1
4,602,707	-				-1.5
4,602,715	-				-0.6
4,602,715	-				-1.0
4,602,730	+				+1.0
4,602,732	+				-2.2
4,602,732	+				+1.0
4,602,733	-				-3.2
4,602,756	-				-2.6
4,602,831	-		BT3559	0.12	-2.1
4,602,831	-		BT3559	0.12	+2.0
4,602,831	-		BT3559	0.12	-0.0
4,602,831	-		BT3559	0.12	+1.0
4,602,832	+		BT3559	0.12	-2.2
4,602,859	+		BT3559	0.15	+1.0
4,602,884	+		BT3559	0.17	-1.8
4,602,889	-		BT3559	0.18	-0.0
4,602,906	+		BT3559	0.19	+0.4
4,602,933	-		BT3559	0.22	-1.0
4,602,941	-		BT3559	0.23	-0.0
4,602,941	-		BT3559	0.23	-0.0
4,602,986	+		BT3559	0.27	-1.9
4,602,989	-		BT3559	0.28	-0.6
4,602,990	+		BT3559	0.28	-0.6
4,602,991	-		BT3559	0.28	-1.0
4,602,991	-		BT3559	0.28	-0.4
4,603,032	+		BT3559	0.32	-2.0
4,603,074	-		BT3559	0.36	-0.0
4,603,113	+		BT3559	0.40	-1.5
4,603,129	-		BT3559	0.41	-1.0
4,603,260	-		BT3559	0.54	-2.0
4,603,261	+		BT3559	0.54	-0.5
4,603,261	+		BT3559	0.54	-1.6
4,603,265	+		BT3559	0.54	-1.9
4,603,265	+		BT3559	0.54	-2.4
4,603,268	+		BT3559	0.55	-2.3
4,603,269	-		BT3559	0.55	-0.0
4,603,286	+		BT3559	0.56	-2.3
4,603,286	+		BT3559	0.56	-0.6
4,603,287	-		BT3559	0.56	-0.5
4,603,287	-		BT3559	0.56	-1.0
4,603,287	-		BT3559	0.56	-2.3
4,603,289	-		BT3559	0.57	-0.0
4,603,289	-		BT3559	0.57	-3.2
4,603,334	-		BT3559	0.61	-1.4
4,603,376	-		BT3559	0.65	+0.6
4,603,467	-		BT3559	0.74	-1.1
4,603,470	-		BT3559	0.74	-2.3
4,603,486	-		BT3559	0.76	-0.0
4,603,510	-		BT3559	0.78	-1.0
4,603,582	+		BT3559	0.85	-0.6
4,603,583	-		BT3559	0.85	-1.6
4,603,681	+				-1.4
4,603,681	+				-1.1
4,603,705	-				-1.5
4,603,738	-				-0.0
4,603,784	+				-0.0
4,603,845	-				+1.0
4,603,845	-				-1.0
4,603,845	-				-0.0
4,603,847	+				-2.0
4,603,872	-				-0.0
4,603,883	-				-2.3
4,603,888	-				-0.0
4,603,930	+				-0.0
4,603,986	+				-2.0
4,604,179	-				+1.0
4,604,200	+		BT3560	0.10	+0.6
4,604,201	-		BT3560	0.10	+1.0
4,604,203	-		BT3560	0.11	-2.6
4,604,205	+		BT3560	0.11	-1.0
4,604,205	+		BT3560	0.11	-0.0
4,604,228	+		BT3560	0.11	-2.0
4,604,262	-		BT3560	0.13	-0.0
4,604,283	+		BT3560	0.14	-0.0
4,604,284	-		BT3560	0.14	-1.5
4,604,317	-		BT3560	0.15	-0.0
4,604,346	+		BT3560	0.16	-0.0
4,604,349	+		BT3560	0.16	-1.4
4,604,374	+		BT3560	0.17	-2.6
4,604,434	-		BT3560	0.20	-0.0
4,604,434	-		BT3560	0.20	-1.7
4,604,437	+		BT3560	0.20	-0.6
4,604,438	-		BT3560	0.20	-0.0
4,604,438	-		BT3560	0.20	-3.1
4,604,438	-		BT3560	0.20	-1.0
4,604,439	+		BT3560	0.20	-1.6
4,604,534	-		BT3560	0.24	-0.5
4,604,586	+		BT3560	0.26	-0.0
4,604,596	-		BT3560	0.26	-1.4
4,604,598	-		BT3560	0.26	-2.8
4,604,601	+		BT3560	0.26	-1.5
4,604,602	-		BT3560	0.26	+1.3
4,604,678	-		BT3560	0.29	-1.6
4,604,678	-		BT3560	0.29	-1.8
4,604,733	-		BT3560	0.31	-1.9