Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3300

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
4,230,395	+		BT3299	0.62	-2.0
4,230,395	+		BT3299	0.62	+0.0
4,230,509	-		BT3299	0.68	-1.4
4,230,537	+		BT3299	0.69	+1.0
4,230,624	+		BT3299	0.73	-1.1
4,230,794	+		BT3299	0.81	-2.0
4,230,879	+				+0.0
4,230,889	+		BT3299	0.86	+0.6
4,230,984	+				-1.0
4,231,011	-				+0.6
4,231,011	-				-1.6
4,231,028	-				-1.4
4,231,180	+				-0.2
4,231,226	+				+1.0
4,231,268	-				-0.6
4,231,270	-				+0.4
4,231,279	+				-2.0
4,231,283	+				-2.1
4,231,284	-				+0.0
4,231,306	+				-2.0
4,231,360	+				-1.0
4,231,360	+				-2.0
4,231,360	+				-1.5
4,231,361	-				-1.7
4,231,366	-				-1.9
4,231,414	+				-1.0
4,231,431	-				-0.9
4,231,601	+		BT3300	0.12	-1.8
4,231,634	+		BT3300	0.14	+0.0
4,231,634	+		BT3300	0.14	-1.5
4,231,637	-		BT3300	0.14	-1.7
4,231,637	-		BT3300	0.14	-1.4
4,231,660	-		BT3300	0.15	-0.8
4,231,682	-		BT3300	0.15	+0.0
4,231,748	+		BT3300	0.18	-1.0
4,231,749	-		BT3300	0.18	+0.0
4,231,776	+		BT3300	0.19	-0.9
4,231,777	-		BT3300	0.19	-1.7
4,231,785	+		BT3300	0.20	-2.3
4,231,785	+		BT3300	0.20	-1.3
4,231,823	-		BT3300	0.21	-1.1
4,231,909	+		BT3300	0.25	-2.1
4,231,909	+		BT3300	0.25	-0.4
4,231,909	+		BT3300	0.25	-0.4
4,231,910	-		BT3300	0.25	-1.3
4,232,021	+		BT3300	0.29	-1.0
4,232,022	-		BT3300	0.29	-1.5
4,232,074	+		BT3300	0.31	+0.0
4,232,096	+		BT3300	0.32	+0.6
4,232,147	-		BT3300	0.34	-1.0
4,232,147	-		BT3300	0.34	+2.0
4,232,190	+		BT3300	0.36	+0.0
4,232,204	+		BT3300	0.37	-0.7
4,232,204	+		BT3300	0.37	-1.8
4,232,204	+		BT3300	0.37	-1.0
4,232,205	-		BT3300	0.37	-2.6
4,232,368	+		BT3300	0.43	-2.0
4,232,369	-		BT3300	0.43	-2.8
4,232,405	-		BT3300	0.45	-2.0
4,232,436	+		BT3300	0.46	+0.3
4,232,499	+		BT3300	0.48	-1.0
4,232,541	+		BT3300	0.50	-1.6
4,232,558	-		BT3300	0.51	+0.0
4,232,602	+		BT3300	0.53	-1.6
4,232,635	+		BT3300	0.54	+1.0
4,232,652	-		BT3300	0.55	-1.2
4,232,675	+		BT3300	0.56	-1.6
4,232,675	+		BT3300	0.56	-3.4
4,232,676	-		BT3300	0.56	-0.9
4,232,679	+		BT3300	0.56	+1.6
4,232,707	+		BT3300	0.57	-1.3
4,232,710	+		BT3300	0.57	-0.6
4,232,710	+		BT3300	0.57	-1.6
4,232,710	+		BT3300	0.57	-1.3
4,232,718	+		BT3300	0.57	+0.0
4,232,789	-		BT3300	0.60	+2.0
4,232,802	-		BT3300	0.61	-1.6
4,232,873	+		BT3300	0.64	-0.6
4,232,874	-		BT3300	0.64	-0.7
4,232,874	-		BT3300	0.64	+0.4
4,232,938	-		BT3300	0.66	-1.5
4,232,940	+		BT3300	0.66	-1.0
4,232,947	+		BT3300	0.67	-2.8
4,232,954	-		BT3300	0.67	-1.2
4,233,048	-				-1.0
4,233,077	+		BT3300	0.72	-1.6
4,233,112	-		BT3300	0.73	-1.0
4,233,133	-		BT3300	0.74	-1.0
4,233,133	-		BT3300	0.74	-1.0
4,233,133	-		BT3300	0.74	+0.0
4,233,178	+		BT3300	0.76	-1.0
4,233,179	-		BT3300	0.76	-1.1
4,233,205	-		BT3300	0.77	-0.6
4,233,226	+		BT3300	0.78	-1.6
4,233,232	+		BT3300	0.78	-1.0
4,233,236	-		BT3300	0.78	-1.8
4,233,302	+		BT3300	0.81	+1.0
4,233,328	+		BT3300	0.82	-0.7
4,233,329	-		BT3300	0.82	+1.6
4,233,338	+		BT3300	0.82	-1.4
4,233,339	-		BT3300	0.82	-1.1
4,233,343	-		BT3300	0.83	+0.0
4,233,359	-		BT3300	0.83	-1.6
4,233,360	+		BT3300	0.83	-1.0
4,233,360	+		BT3300	0.83	+0.0
4,233,361	-		BT3300	0.83	-2.3
4,233,361	-		BT3300	0.83	+0.1
4,233,397	+		BT3300	0.85	-0.7
4,233,398	-		BT3300	0.85	+0.0
4,233,413	+		BT3300	0.85	-0.8
4,233,493	+		BT3300	0.89	+0.0
4,233,609	+				-1.6
4,233,610	-				-1.6
4,233,650	+				-1.3
4,233,668	+				-0.6
4,233,668	+				-2.0
4,233,700	+				-1.3
4,233,702	+				-1.6
4,233,793	+				-1.3
4,233,793	+				-1.4
4,233,812	-				+1.6
4,233,847	+				-3.3
4,233,852	+				+0.0
4,234,023	+		BT3301	0.11	+0.0
4,234,028	+		BT3301	0.12	-1.6
4,234,029	-		BT3301	0.12	-1.0
4,234,097	+		BT3301	0.18	-1.2
4,234,141	+		BT3301	0.21	-1.3
4,234,182	+		BT3301	0.25	-1.3
4,234,183	-		BT3301	0.25	-1.1
4,234,183	-		BT3301	0.25	+0.0
4,234,183	-		BT3301	0.25	-1.0
4,234,307	+		BT3301	0.35	-1.7
4,234,313	-		BT3301	0.36	+0.0
4,234,352	-		BT3301	0.39	-1.0
4,234,381	+		BT3301	0.42	-2.4
4,234,429	+		BT3301	0.46	-1.0
4,234,429	+		BT3301	0.46	-1.0
4,234,448	+		BT3301	0.47	-1.0
4,234,506	+		BT3301	0.52	+0.0
4,234,528	+		BT3301	0.54	-1.0
4,234,607	-		BT3301	0.61	-0.8
4,234,633	+		BT3301	0.63	-2.0
4,234,636	+		BT3301	0.63	-1.0
4,234,693	+		BT3301	0.68	-0.8
4,234,737	-		BT3301	0.72	+0.0
4,234,737	-		BT3301	0.72	-1.4
4,234,762	-		BT3301	0.74	-0.3