Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3009

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
3,797,168	-		BT3008	0.54	-2.3
3,797,186	-		BT3008	0.55	-1.5
3,797,196	-		BT3008	0.56	+0.7
3,797,212	+		BT3008	0.57	-2.0
3,797,212	+		BT3008	0.57	-0.0
3,797,212	+		BT3008	0.57	-2.1
3,797,248	+		BT3008	0.60	-1.5
3,797,371	-		BT3008	0.71	-1.6
3,797,451	-		BT3008	0.78	-1.1
3,797,516	+		BT3008	0.83	+1.0
3,797,517	-		BT3008	0.83	-1.2
3,797,546	-		BT3008	0.86	-1.0
3,797,579	+		BT3008	0.88	-1.1
3,797,588	-		BT3008	0.89	-1.5
3,797,723	+				+0.5
3,797,724	-				-2.3
3,797,733	-				-2.6
3,797,733	-				-1.6
3,797,733	-				-3.0
3,797,733	-				-1.1
3,797,758	+				-0.3
3,797,766	+				+1.0
3,797,766	+				-1.2
3,797,767	-				-1.8
3,797,769	-				-0.8
3,797,870	-				-1.1
3,797,956	+				-1.5
3,797,956	+				-0.0
3,797,964	+				-1.2
3,797,964	+				-1.9
3,798,009	-				-1.0
3,798,012	-				-0.8
3,798,012	-				-2.6
3,798,063	+				+1.6
3,798,071	+				-1.7
3,798,071	+				-1.3
3,798,071	+				-1.0
3,798,072	-				-0.8
3,798,072	-				-1.9
3,798,106	-				-1.1
3,798,108	+				-1.4
3,798,109	-				-1.7
3,798,156	-				+2.3
3,798,157	-				-1.0
3,798,157	-				-1.4
3,798,157	-				-1.0
3,798,157	-				-0.0
3,798,160	+				-2.6
3,798,161	-				-0.9
3,798,252	-				-1.4
3,798,261	+				-0.4
3,798,262	-				-0.0
3,798,331	+		BT3009	0.12	-1.0
3,798,333	+		BT3009	0.12	-1.3
3,798,343	-		BT3009	0.13	-1.1
3,798,364	-		BT3009	0.13	-2.0
3,798,420	+		BT3009	0.16	-0.0
3,798,421	-		BT3009	0.16	-1.0
3,798,422	+		BT3009	0.16	-2.3
3,798,422	+		BT3009	0.16	+0.6
3,798,422	+		BT3009	0.16	+0.5
3,798,422	+		BT3009	0.16	-2.3
3,798,422	+		BT3009	0.16	-2.0
3,798,423	-		BT3009	0.16	+0.6
3,798,427	-		BT3009	0.16	-0.0
3,798,428	+		BT3009	0.16	-0.0
3,798,429	-		BT3009	0.16	-0.0
3,798,450	-		BT3009	0.17	-1.8
3,798,484	-		BT3009	0.18	-1.0
3,798,585	+		BT3009	0.22	-1.5
3,798,585	+		BT3009	0.22	+1.0
3,798,586	-		BT3009	0.22	-1.2
3,798,586	-		BT3009	0.22	-2.0
3,798,586	-		BT3009	0.22	-0.8
3,798,703	+		BT3009	0.27	-1.0
3,798,717	+		BT3009	0.27	-0.0
3,798,718	-		BT3009	0.27	-1.6
3,798,756	-		BT3009	0.29	-2.0
3,798,756	-		BT3009	0.29	-0.0
3,798,861	+		BT3009	0.33	+1.0
3,798,877	-		BT3009	0.33	-1.6
3,798,903	+		BT3009	0.34	-1.5
3,798,904	-		BT3009	0.34	+0.6
3,798,904	-		BT3009	0.34	-0.5
3,798,906	-		BT3009	0.34	-0.7
3,798,911	-		BT3009	0.35	-3.0
3,798,921	+		BT3009	0.35	-1.9
3,798,923	+		BT3009	0.35	-0.4
3,798,924	-		BT3009	0.35	+0.6
3,798,951	+		BT3009	0.36	-0.8
3,798,953	+		BT3009	0.36	-0.0
3,799,013	+		BT3009	0.38	-0.0
3,799,013	+		BT3009	0.38	+1.3
3,799,013	+		BT3009	0.38	-2.3
3,799,052	+		BT3009	0.40	-0.0
3,799,089	-		BT3009	0.41	+1.0
3,799,109	-		BT3009	0.42	-2.8
3,799,109	-		BT3009	0.42	-1.0
3,799,135	-		BT3009	0.43	+0.8
3,799,135	-		BT3009	0.43	-1.1
3,799,167	+		BT3009	0.44	+0.7
3,799,168	-		BT3009	0.44	-1.4
3,799,179	+		BT3009	0.45	-0.0
3,799,206	+		BT3009	0.46	-1.0
3,799,207	-		BT3009	0.46	-2.2
3,799,222	-		BT3009	0.47	-0.6
3,799,324	+		BT3009	0.50	+1.0
3,799,353	+		BT3009	0.52	-0.0
3,799,354	-		BT3009	0.52	-2.3
3,799,354	-		BT3009	0.52	-1.4
3,799,355	+		BT3009	0.52	-1.2
3,799,355	+		BT3009	0.52	-1.6
3,799,355	+		BT3009	0.52	-1.2
3,799,356	-				-1.6
3,799,356	-		BT3009	0.52	-1.0
3,799,359	+		BT3009	0.52	+0.3
3,799,359	+		BT3009	0.52	-1.2
3,799,369	+		BT3009	0.52	+1.0
3,799,379	+		BT3009	0.53	-1.9
3,799,380	-		BT3009	0.53	-2.6
3,799,432	-		BT3009	0.55	-1.2
3,799,468	-		BT3009	0.56	-0.9
3,799,480	+		BT3009	0.56	-0.0
3,799,485	+		BT3009	0.57	-1.2
3,799,491	+		BT3009	0.57	-0.3
3,799,491	+		BT3009	0.57	-1.0
3,799,491	+		BT3009	0.57	-1.8
3,799,491	+		BT3009	0.57	-1.0
3,799,546	-		BT3009	0.59	-1.4
3,799,633	+		BT3009	0.62	-1.4
3,799,664	-		BT3009	0.64	-0.5
3,799,688	-		BT3009	0.65	-1.6
3,799,752	+		BT3009	0.67	-0.0
3,799,752	+		BT3009	0.67	-0.0
3,799,752	+		BT3009	0.67	-1.4
3,799,753	-		BT3009	0.67	-1.0
3,799,843	+		BT3009	0.70	-2.0
3,799,866	+		BT3009	0.71	-0.8
3,799,958	+				-0.0
3,799,959	-		BT3009	0.75	-0.3
3,799,969	+		BT3009	0.75	-1.6
3,799,994	-		BT3009	0.76	-1.3
3,799,994	-		BT3009	0.76	-2.7
3,800,039	+		BT3009	0.78	-1.8
3,800,069	+		BT3009	0.79	-1.6
3,800,070	-		BT3009	0.79	-1.0
3,800,104	+		BT3009	0.81	-0.4
3,800,105	-				-0.0
3,800,110	+		BT3009	0.81	-0.4
3,800,111	-		BT3009	0.81	-0.6
3,800,187	+		BT3009	0.84	-0.0
3,800,212	-		BT3009	0.85	-0.0
3,800,229	-		BT3009	0.85	-1.0
3,800,241	+		BT3009	0.86	-1.0
3,800,294	+		BT3009	0.88	-1.1
3,800,295	-		BT3009	0.88	-1.3
3,800,295	-		BT3009	0.88	-2.2
3,800,295	-		BT3009	0.88	-1.1
3,800,295	-		BT3009	0.88	-0.4
3,800,325	+		BT3009	0.89	-1.2
3,800,335	-		BT3009	0.89	-0.0
3,800,416	+				-1.5
3,800,416	+				-1.0
3,800,432	-				-0.3
3,800,488	+				-1.2
3,800,575	-				-1.8
3,800,676	+				-0.4
3,800,676	+				-1.6
3,800,693	+				-1.0
3,800,698	+				-2.0
3,800,698	+				-0.2
3,800,699	-				-0.6
3,800,702	+				-0.0
3,800,702	+				+0.5
3,800,778	+				-1.1
3,800,881	-				-1.1
3,800,892	+				-1.8
3,800,907	+				-1.0
3,800,907	+				-1.2
3,800,908	-				-0.0
3,800,908	-				-0.2
3,800,976	+				-1.0
3,800,977	-				-0.6
3,800,981	+				-3.8
3,801,013	+				-1.1
3,801,014	-				+2.0
3,801,017	+				+0.4
3,801,017	+				-1.9
3,801,017	+				-1.8
3,801,017	+				-2.1
3,801,030	+				-0.0
3,801,032	+				-2.3
3,801,034	+				-1.0
3,801,034	+				-1.0
3,801,035	-				-0.0
3,801,148	+		BT3010	0.13	-0.6
3,801,148	+		BT3010	0.13	-1.0
3,801,152	+		BT3010	0.14	-0.0
3,801,152	+		BT3010	0.14	-0.0
3,801,152	+		BT3010	0.14	-1.8
3,801,153	-		BT3010	0.14	-0.4
3,801,175	+		BT3010	0.18	-1.6
3,801,176	-		BT3010	0.18	+0.6
3,801,192	-		BT3010	0.21	+1.0
3,801,330	+		BT3010	0.45	-1.5
3,801,330	+		BT3010	0.45	-0.2
3,801,349	-		BT3010	0.48	-1.3
3,801,398	-		BT3010	0.57	-0.6
3,801,449	-		BT3010	0.66	-0.0
3,801,540	+		BT3010	0.81	-0.0
3,801,559	-		BT3010	0.85	-1.5
3,801,583	-		BT3010	0.89	-2.0
3,801,590	+				+1.0