Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2854

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
3,560,328	+		BT2852	0.49	-0.0
3,560,363	+		BT2852	0.52	-0.5
3,560,364	-		BT2852	0.52	+1.0
3,560,404	+		BT2852	0.54	-1.2
3,560,405	-		BT2852	0.54	-1.5
3,560,466	+		BT2852	0.58	-0.3
3,560,468	+		BT2852	0.58	-1.8
3,560,470	+		BT2852	0.59	+0.4
3,560,473	+		BT2852	0.59	-1.0
3,560,474	-		BT2852	0.59	-0.6
3,560,474	-		BT2852	0.59	-0.0
3,560,573	+		BT2852	0.65	-0.7
3,560,573	+		BT2852	0.65	+1.0
3,560,573	+		BT2852	0.65	-2.0
3,560,586	-		BT2852	0.66	-0.0
3,560,617	+		BT2852	0.68	-1.0
3,560,617	+		BT2852	0.68	-0.2
3,560,885	+		BT2852	0.85	-1.0
3,560,915	+		BT2852	0.87	-1.7
3,560,917	+		BT2852	0.87	-2.5
3,560,918	-		BT2852	0.88	-0.7
3,560,918	-		BT2852	0.88	-1.0
3,560,939	+		BT2852	0.89	-1.0
3,560,942	-		BT2852	0.89	-2.4
3,560,980	+				-1.0
3,561,060	+				-1.0
3,561,111	-				-1.2
3,561,126	+				-2.5
3,561,131	-				-1.5
3,561,148	+				-2.5
3,561,148	+				-1.5
3,561,149	-				-1.6
3,561,184	+		BT2853	0.23	+1.0
3,561,274	+		BT2853	0.71	-1.8
3,561,274	+		BT2853	0.71	-0.3
3,561,275	-		BT2853	0.71	-1.0
3,561,375	+				+1.0
3,561,375	+				-1.4
3,561,534	+				-2.6
3,561,560	-		BT2854	0.10	+2.1
3,561,563	+		BT2854	0.10	-1.3
3,561,563	+		BT2854	0.10	-2.0
3,561,574	+		BT2854	0.11	-1.0
3,561,575	-		BT2854	0.11	-1.4
3,561,613	+		BT2854	0.13	-3.4
3,561,647	-		BT2854	0.14	-2.9
3,561,675	-		BT2854	0.15	-2.0
3,561,675	-		BT2854	0.15	-0.0
3,561,689	+		BT2854	0.16	-1.2
3,561,689	+		BT2854	0.16	-0.0
3,561,690	-		BT2854	0.16	-1.3
3,561,738	+		BT2854	0.18	-0.4
3,561,739	-		BT2854	0.18	-1.0
3,561,926	+		BT2854	0.26	+1.0
3,562,103	+		BT2854	0.34	+1.6
3,562,128	+		BT2854	0.35	-1.0
3,562,259	-		BT2854	0.41	-0.2
3,562,261	+		BT2854	0.41	-1.3
3,562,262	-		BT2854	0.41	-1.3
3,562,270	+		BT2854	0.41	-1.2
3,562,303	-		BT2854	0.43	-1.6
3,562,357	+		BT2854	0.45	-1.3
3,562,374	+		BT2854	0.46	-0.6
3,562,374	+		BT2854	0.46	+2.0
3,562,376	+		BT2854	0.46	+1.0
3,562,377	-		BT2854	0.46	+1.0
3,562,442	-		BT2854	0.49	-0.0
3,562,580	-		BT2854	0.55	-0.0
3,562,600	+		BT2854	0.56	-1.2
3,562,617	+		BT2854	0.57	+1.0
3,562,622	+		BT2854	0.57	-1.4
3,562,695	+		BT2854	0.60	-2.3
3,562,746	-		BT2854	0.62	+2.3
3,562,776	+		BT2854	0.64	-2.2
3,562,776	+		BT2854	0.64	-1.4
3,562,777	-		BT2854	0.64	-1.0
3,562,787	+		BT2854	0.64	-0.0
3,562,820	+		BT2854	0.66	-1.4
3,562,827	+		BT2854	0.66	-2.3
3,562,829	+		BT2854	0.66	+1.0
3,562,883	+		BT2854	0.68	-1.6
3,562,889	+		BT2854	0.69	-0.8
3,562,981	-		BT2854	0.73	-3.2
3,563,135	-		BT2854	0.79	-0.0
3,563,193	+		BT2854	0.82	-0.0
3,563,226	+		BT2854	0.83	-1.6
3,563,226	+		BT2854	0.83	-0.2
3,563,227	-		BT2854	0.83	-1.2
3,563,232	+		BT2854	0.84	-1.7
3,563,306	+		BT2854	0.87	-0.3
3,563,307	-		BT2854	0.87	-1.6
3,563,307	-		BT2854	0.87	-0.0
3,563,325	-		BT2854	0.88	-1.3
3,563,325	-		BT2854	0.88	-0.5
3,563,375	+		BT2854	0.90	+0.2
3,563,393	-				-1.6
3,563,394	+				-0.0
3,563,394	+				-0.6
3,563,508	+				-1.2
3,563,509	-				-0.6
3,563,514	+				-2.5
3,563,516	+				-1.1
3,563,516	+				-0.0
3,563,575	+				-2.0
3,563,605	-				-0.0
3,563,612	+				-0.0
3,563,613	-				-0.6
3,563,617	-				-1.4
3,563,619	+				-1.2
3,563,621	+				-0.8
3,563,622	-				-1.1
3,563,629	-				-0.0
3,563,682	+				-0.0
3,563,683	-				-0.0
3,563,718	-				-0.4
3,563,776	+				-2.3
3,563,782	+				-0.9
3,563,812	-				-0.9
3,563,940	-		BT2855	0.11	-1.3
3,563,998	+		BT2855	0.13	-1.0
3,563,999	-		BT2855	0.13	-0.0
3,564,093	+		BT2855	0.16	-1.6
3,564,093	+		BT2855	0.16	-0.5
3,564,097	+		BT2855	0.16	-2.3
3,564,097	+		BT2855	0.16	-0.5
3,564,097	+		BT2855	0.16	-1.6
3,564,101	+		BT2855	0.16	-1.0
3,564,164	+		BT2855	0.19	-0.2
3,564,262	+		BT2855	0.22	-1.4
3,564,281	+		BT2855	0.23	-2.6
3,564,281	+		BT2855	0.23	+0.4
3,564,282	-		BT2855	0.23	-0.0
3,564,283	+		BT2855	0.23	-0.0
3,564,283	+		BT2855	0.23	-0.5
3,564,283	+		BT2855	0.23	-0.3
3,564,284	-		BT2855	0.23	-0.6
3,564,284	-		BT2855	0.23	-3.1
3,564,429	+		BT2855	0.28	-1.2
3,564,429	+		BT2855	0.28	-0.0
3,564,481	-		BT2855	0.29	-0.6
3,564,507	+		BT2855	0.30	-1.2
3,564,507	+		BT2855	0.30	-0.0
3,564,513	-		BT2855	0.30	-0.7
3,564,513	-		BT2855	0.30	-0.6
3,564,600	+		BT2855	0.33	-1.9
3,564,601	-		BT2855	0.33	-1.1
3,564,601	-		BT2855	0.33	+0.3