Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1780

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
2,221,055	+		BT1779	0.44	-1.3
2,221,056	-		BT1779	0.44	-0.0
2,221,250	-		BT1779	0.56	+1.0
2,221,304	-		BT1779	0.59	-1.0
2,221,630	+		BT1779	0.78	-2.0
2,221,647	+		BT1779	0.79	+1.0
2,221,686	+		BT1779	0.81	-2.0
2,221,839	+		BT1779	0.90	-1.0
2,221,936	-				-2.0
2,222,041	+				-1.8
2,222,213	+				-1.3
2,222,220	-				+1.0
2,222,271	+				+1.0
2,222,271	+				-1.6
2,222,315	+				-2.4
2,222,316	-				-0.0
2,222,317	+				+1.5
2,222,318	-				-0.8
2,222,321	+				-2.0
2,222,354	+		BT1780	0.11	-0.1
2,222,361	+		BT1780	0.11	-0.0
2,222,361	+		BT1780	0.11	-2.0
2,222,361	+		BT1780	0.11	+1.0
2,222,361	+		BT1780	0.11	-2.4
2,222,361	+		BT1780	0.11	-1.6
2,222,366	+		BT1780	0.11	+1.0
2,222,367	-		BT1780	0.11	-0.0
2,222,475	-		BT1780	0.15	+1.0
2,222,480	-		BT1780	0.15	-2.0
2,222,578	+		BT1780	0.19	-1.0
2,222,578	+		BT1780	0.19	-1.0
2,222,578	+		BT1780	0.19	-1.6
2,222,579	-		BT1780	0.19	-1.3
2,222,593	+		BT1780	0.19	-0.8
2,222,593	+		BT1780	0.19	-1.0
2,222,595	+		BT1780	0.19	-0.0
2,222,690	+		BT1780	0.23	+0.2
2,222,757	+		BT1780	0.25	-0.0
2,222,759	+		BT1780	0.25	-0.0
2,222,762	-		BT1780	0.25	-1.6
2,222,794	+		BT1780	0.26	-0.0
2,222,858	-		BT1780	0.29	-1.0
2,222,858	-		BT1780	0.29	-0.0
2,222,871	+		BT1780	0.29	-0.0
2,222,871	+		BT1780	0.29	+1.0
2,222,872	-		BT1780	0.29	-1.0
2,222,924	+		BT1780	0.31	-1.8
2,222,954	+		BT1780	0.32	+1.5
2,223,131	+		BT1780	0.38	-1.6
2,223,176	+		BT1780	0.40	-1.0
2,223,217	+		BT1780	0.41	+1.5
2,223,350	+		BT1780	0.46	-1.0
2,223,546	+		BT1780	0.53	+0.2
2,223,547	-		BT1780	0.53	+1.0
2,223,567	-		BT1780	0.53	-1.0
2,223,613	+		BT1780	0.55	-1.2
2,223,613	+		BT1780	0.55	-0.0
2,223,613	+		BT1780	0.55	-1.9
2,223,614	-		BT1780	0.55	-1.2
2,223,674	+		BT1780	0.57	+0.7
2,223,688	+		BT1780	0.58	+1.0
2,223,768	+		BT1780	0.60	-2.0
2,223,768	+		BT1780	0.60	-0.8
2,223,768	+		BT1780	0.60	-1.6
2,223,813	-		BT1780	0.62	-0.0
2,223,850	+		BT1780	0.63	-0.0
2,223,917	+		BT1780	0.66	-2.2
2,223,975	-		BT1780	0.68	-1.0
2,223,977	+		BT1780	0.68	-0.9
2,223,998	-		BT1780	0.69	-1.0
2,224,021	-		BT1780	0.69	-0.0
2,224,121	+		BT1780	0.73	-0.8
2,224,218	-		BT1780	0.76	-1.8
2,224,220	+		BT1780	0.76	-1.0
2,224,257	+		BT1780	0.78	-1.0
2,224,332	-		BT1780	0.80	+1.0
2,224,397	+		BT1780	0.83	-0.6
2,224,398	-		BT1780	0.83	-0.2
2,224,398	-		BT1780	0.83	-1.4
2,224,528	+		BT1780	0.87	-0.0
2,224,532	+		BT1780	0.87	-0.6
2,224,659	-				-0.0
2,224,819	-				-0.0
2,224,827	+				+1.0
2,224,827	+				-0.0
2,224,828	-				-0.7
2,224,829	+				-0.5
2,224,830	-				-1.8
2,224,910	+				-2.1
2,224,910	+				+0.3
2,224,911	-				-1.0
2,224,928	-				-0.5
2,224,961	-				-0.5
2,225,017	+				-0.7
2,225,018	-				-0.0
2,225,114	+				-1.0
2,225,129	+				-0.9
2,225,129	+				-0.8
2,225,131	+				-2.5
2,225,136	-				-0.0
2,225,237	+		BT1781	0.13	-1.0
2,225,246	-		BT1781	0.13	-0.8
2,225,273	+		BT1781	0.15	-1.6
2,225,345	+		BT1781	0.18	-0.7
2,225,392	+		BT1781	0.20	+1.3
2,225,398	+		BT1781	0.21	-1.0
2,225,459	+		BT1781	0.24	-1.0
2,225,461	+		BT1781	0.24	-1.0
2,225,461	+		BT1781	0.24	-1.2
2,225,506	-		BT1781	0.26	-0.0
2,225,603	+		BT1781	0.31	-0.2
2,225,603	+		BT1781	0.31	-2.2
2,225,603	+		BT1781	0.31	-0.0
2,225,604	-		BT1781	0.31	-1.6
2,225,672	+		BT1781	0.34	-0.3
2,225,673	-		BT1781	0.34	-2.3
2,225,752	+		BT1781	0.38	-0.6
2,225,752	+		BT1781	0.38	-1.2
2,225,752	+		BT1781	0.38	-1.0
2,225,778	+		BT1781	0.39	-0.0
2,225,778	+		BT1781	0.39	-1.3
2,225,779	-		BT1781	0.39	+0.4
2,225,803	+		BT1781	0.41	-1.6
2,225,803	+		BT1781	0.41	-0.0
2,225,803	+		BT1781	0.41	-0.3
2,225,807	+		BT1781	0.41	-1.0
2,225,807	+		BT1781	0.41	-0.6
2,225,807	+		BT1781	0.41	-1.9
2,225,807	+		BT1781	0.41	-0.9
2,225,808	-		BT1781	0.41	-2.0
2,225,853	-		BT1781	0.43	-1.2