Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3069

Experiment: D-Xylose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose 2.5 mg/ml (C)
3,892,850	+				-1.0
3,892,902	-				-1.0
3,892,952	+				-1.9
3,892,953	-				-2.4
3,892,953	-				-0.8
3,892,966	+				-1.5
3,892,966	+				+1.1
3,892,967	-				-3.1
3,892,974	-				-2.0
3,892,994	-				-1.5
3,893,036	+		BT3069	0.10	-0.3
3,893,037	-		BT3069	0.10	-2.3
3,893,092	+		BT3069	0.15	-0.9
3,893,092	+		BT3069	0.15	-1.5
3,893,108	-		BT3069	0.16	-0.6
3,893,108	-		BT3069	0.16	-0.6
3,893,176	+		BT3069	0.21	-1.3
3,893,214	-		BT3069	0.24	-0.4
3,893,215	+		BT3069	0.24	+1.6
3,893,216	-		BT3069	0.24	-2.5
3,893,292	+		BT3069	0.31	-0.4
3,893,292	+		BT3069	0.31	-1.4
3,893,320	+		BT3069	0.33	+2.1
3,893,320	+		BT3069	0.33	+0.8
3,893,349	+		BT3069	0.35	+1.1
3,893,355	+		BT3069	0.36	+0.1
3,893,355	+		BT3069	0.36	-1.2
3,893,355	+		BT3069	0.36	-0.9
3,893,484	+		BT3069	0.46	-0.8
3,893,484	+		BT3069	0.46	-1.9
3,893,484	+		BT3069	0.46	+0.1
3,893,485	-		BT3069	0.46	-1.5
3,893,485	-		BT3069	0.46	-0.9
3,893,485	-		BT3069	0.46	+0.6
3,893,490	+		BT3069	0.46	-0.7
3,893,490	+		BT3069	0.46	-0.7
3,893,491	-		BT3069	0.46	-0.5
3,893,505	+		BT3069	0.48	-1.5
3,893,605	+		BT3069	0.56	-0.7
3,893,606	-		BT3069	0.56	-1.2
3,893,607	+		BT3069	0.56	-0.5
3,893,646	+		BT3069	0.59	+0.1
3,893,647	-		BT3069	0.59	+0.1
3,893,681	+		BT3069	0.62	-0.9
3,893,730	-		BT3069	0.66	-0.4
3,893,741	+		BT3069	0.66	-0.5
3,893,761	+		BT3069	0.68	-1.3
3,893,777	-		BT3069	0.69	+0.1
3,893,982	-		BT3069	0.86	-0.1
3,894,126	-				+0.1
3,894,126	-				-1.9
3,894,126	-				+2.1
3,894,126	-				+0.5
3,894,126	-				-1.6
3,894,126	-				+0.1
3,894,126	-				+0.6
3,894,128	+				+1.1
3,894,129	-				-1.0
3,894,129	-				+0.1
3,894,129	-				-0.9
3,894,186	-				-0.2
3,894,192	-				+1.3
3,894,194	-				-1.5
3,894,304	-		BT3070	0.11	+1.1
3,894,307	-		BT3070	0.11	-1.5
3,894,336	+		BT3070	0.14	-1.9
3,894,336	+		BT3070	0.14	-1.5
3,894,389	-		BT3070	0.18	+0.1
3,894,495	+		BT3070	0.28	-3.3
3,894,607	+		BT3070	0.39	-0.5
3,894,618	+		BT3070	0.40	-0.9
3,894,738	+		BT3070	0.51	-1.5
3,894,756	-		BT3070	0.53	+0.1
3,894,759	+		BT3070	0.53	-1.8
3,894,759	+		BT3070	0.53	-1.6
3,894,760	-		BT3070	0.53	-1.5
3,894,831	+		BT3070	0.60	+1.1
3,894,832	-		BT3070	0.60	-1.9
3,894,862	+		BT3070	0.62	-1.6
3,894,865	+		BT3070	0.63	-0.9
3,894,866	-		BT3070	0.63	-0.5
3,894,866	-		BT3070	0.63	+2.1
3,894,887	-		BT3070	0.65	+0.1
3,894,887	-		BT3070	0.65	+0.1
3,894,923	+		BT3070	0.68	-1.4
3,894,923	+		BT3070	0.68	-0.4
3,894,923	+		BT3070	0.68	-0.8
3,894,930	+		BT3070	0.69	-0.6
3,894,954	+		BT3070	0.71	-1.3
3,894,993	-		BT3070	0.75	-0.8