Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4714

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
6,187,205	+		BT4713	0.66	+0.4
6,187,210	+		BT4713	0.66	-1.8
6,187,213	-		BT4713	0.66	-0.5
6,187,270	+		BT4713	0.69	-1.6
6,187,271	-		BT4713	0.69	+1.5
6,187,326	+		BT4713	0.73	-0.1
6,187,369	+		BT4713	0.75	-0.1
6,187,372	+		BT4713	0.75	-0.1
6,187,396	+		BT4713	0.77	+1.5
6,187,568	+		BT4713	0.86	-1.6
6,187,585	+		BT4713	0.87	-0.1
6,187,588	-		BT4713	0.88	-1.5
6,187,610	-		BT4713	0.89	-1.1
6,187,705	+				-0.6
6,187,706	-				-1.1
6,187,752	+				-0.1
6,187,870	+				+0.5
6,187,944	+				-0.5
6,187,944	+				+1.9
6,187,945	-				+0.5
6,187,946	+				-1.6
6,187,947	-				-2.6
6,188,168	+				-1.8
6,188,226	+				-1.6
6,188,227	-				-1.5
6,188,227	-				-0.1
6,188,316	+				-2.1
6,188,346	+				-2.1
6,188,411	-				+1.5
6,188,446	+		BT4714	0.11	-0.1
6,188,579	-		BT4714	0.17	+0.9
6,188,655	+		BT4714	0.20	-2.4
6,188,698	+		BT4714	0.22	-1.9
6,188,705	+		BT4714	0.22	-0.1
6,188,857	+		BT4714	0.29	-0.1
6,188,858	-		BT4714	0.29	-1.5
6,188,912	+		BT4714	0.31	-0.5
6,188,913	-		BT4714	0.31	-0.4
6,188,913	-		BT4714	0.31	-1.6
6,188,913	-		BT4714	0.31	-1.6
6,189,005	+		BT4714	0.35	-0.3
6,189,015	+		BT4714	0.36	-0.7
6,189,015	+		BT4714	0.36	-2.1
6,189,061	-		BT4714	0.38	-1.8
6,189,105	+		BT4714	0.40	-1.1
6,189,106	-		BT4714	0.40	-0.1
6,189,107	+		BT4714	0.40	+0.9
6,189,108	-		BT4714	0.40	-1.1
6,189,110	-		BT4714	0.40	-1.6
6,189,153	+		BT4714	0.42	-2.4
6,189,154	-		BT4714	0.42	-1.5
6,189,166	+		BT4714	0.42	-2.3
6,189,167	-		BT4714	0.42	-1.4
6,189,226	+		BT4714	0.45	-1.6
6,189,226	+		BT4714	0.45	+1.5
6,189,271	+		BT4714	0.47	-0.1
6,189,288	+		BT4714	0.47	-1.0
6,189,329	+		BT4714	0.49	-0.1
6,189,358	-		BT4714	0.50	-0.1
6,189,409	+		BT4714	0.53	+0.5
6,189,410	-		BT4714	0.53	-0.6
6,189,414	+		BT4714	0.53	-1.6
6,189,503	-		BT4714	0.57	-0.1
6,189,503	-		BT4714	0.57	+0.5
6,189,505	+		BT4714	0.57	+1.5
6,189,506	-		BT4714	0.57	-1.2
6,189,506	-		BT4714	0.57	+0.5
6,189,520	+		BT4714	0.57	-1.1
6,189,520	+		BT4714	0.57	-1.6
6,189,521	-		BT4714	0.58	+0.9
6,189,521	-		BT4714	0.58	-0.7
6,189,521	-		BT4714	0.58	-1.3
6,189,589	+		BT4714	0.60	-1.1
6,189,599	+		BT4714	0.61	-0.1
6,189,600	-		BT4714	0.61	-1.0
6,189,693	+		BT4714	0.65	-1.6
6,189,728	+		BT4714	0.66	-0.1
6,189,729	-		BT4714	0.67	-1.4
6,189,806	-		BT4714	0.70	-2.2
6,189,881	+		BT4714	0.73	-0.1
6,189,882	-		BT4714	0.73	-1.1
6,189,971	+		BT4714	0.77	-0.1
6,189,972	-		BT4714	0.77	-1.0
6,190,054	-		BT4714	0.81	-0.1
6,190,066	+		BT4714	0.81	-1.8
6,190,095	-		BT4714	0.82	-0.1
6,190,148	-		BT4714	0.85	+0.9
6,190,277	+				-1.1
6,190,308	+				-1.1
6,190,308	+				-0.4
6,190,309	-				-2.6
6,190,464	+				-1.2
6,190,465	-				-0.7
6,190,465	-				-2.4
6,190,517	-				-1.9
6,190,536	-				-2.4
6,190,619	-				-0.1
6,190,621	-				-0.3
6,190,750	+		BT4715	0.30	-1.1
6,190,750	+		BT4715	0.30	-0.1
6,190,757	+		BT4715	0.31	-1.6
6,190,758	-		BT4715	0.32	-1.6
6,190,760	+		BT4715	0.32	-0.1
6,190,790	+		BT4715	0.38	-0.1
6,190,818	-		BT4715	0.44	-1.2
6,190,827	+		BT4715	0.46	-1.3
6,190,911	+		BT4715	0.64	+0.9
6,190,911	+		BT4715	0.64	-0.6
6,190,912	-		BT4715	0.64	-1.0
6,190,960	+		BT4715	0.74	-1.3
6,190,989	+		BT4715	0.80	-1.1
6,190,989	+		BT4715	0.80	-2.4
6,191,033	+		BT4715	0.89	-0.1
6,191,128	+				-2.4
6,191,129	-				+0.5
6,191,241	+				-1.6
6,191,246	-				-0.1
6,191,246	-				-1.5
6,191,246	-				+0.4
6,191,321	+		BT4716	0.11	+0.5