Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4111

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4110 and BT4111 are separated by 65 nucleotidesBT4111 and BT4112 are separated by 928 nucleotides BT4110: BT4110 - putative pectinesterase precursor (NCBI ptt file), at 5,374,134 to 5,375,744 BT4110 BT4111: BT4111 - two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file), at 5,375,810 to 5,380,345 BT4111 BT4112: BT4112 - hypothetical protein (NCBI ptt file), at 5,381,274 to 5,382,857 BT4112 Position (kb) 5375 5376 5377 5378 5379 5380 5381Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5374.830 kb on + strand, within BT4110at 5374.830 kb on + strand, within BT4110at 5374.848 kb on + strand, within BT4110at 5374.849 kb on - strand, within BT4110at 5374.849 kb on - strand, within BT4110at 5374.849 kb on - strand, within BT4110at 5374.935 kb on - strand, within BT4110at 5374.935 kb on - strand, within BT4110at 5374.941 kb on - strand, within BT4110at 5375.000 kb on + strand, within BT4110at 5375.001 kb on - strand, within BT4110at 5375.078 kb on + strand, within BT4110at 5375.112 kb on + strand, within BT4110at 5375.113 kb on - strand, within BT4110at 5375.253 kb on - strand, within BT4110at 5375.256 kb on + strand, within BT4110at 5375.257 kb on - strand, within BT4110at 5375.257 kb on - strand, within BT4110at 5375.277 kb on + strand, within BT4110at 5375.292 kb on + strand, within BT4110at 5375.332 kb on + strand, within BT4110at 5375.352 kb on + strand, within BT4110at 5375.355 kb on - strand, within BT4110at 5375.361 kb on - strand, within BT4110at 5375.418 kb on + strand, within BT4110at 5375.419 kb on - strand, within BT4110at 5375.467 kb on + strand, within BT4110at 5375.467 kb on + strand, within BT4110at 5375.468 kb on - strand, within BT4110at 5375.468 kb on - strand, within BT4110at 5375.506 kb on + strand, within BT4110at 5375.507 kb on - strand, within BT4110at 5375.535 kb on - strand, within BT4110at 5375.601 kb on + strandat 5375.742 kb on + strandat 5375.754 kb on - strandat 5375.762 kb on - strandat 5375.780 kb on - strandat 5375.805 kb on + strandat 5375.806 kb on - strandat 5375.806 kb on - strandat 5375.809 kb on - strandat 5375.815 kb on - strandat 5375.827 kb on - strandat 5375.833 kb on - strandat 5375.859 kb on + strandat 5376.017 kb on + strandat 5376.039 kb on - strandat 5376.075 kb on - strandat 5376.075 kb on - strandat 5376.103 kb on - strandat 5376.187 kb on + strandat 5376.187 kb on + strandat 5376.188 kb on - strandat 5376.188 kb on - strandat 5376.188 kb on - strandat 5376.192 kb on - strandat 5376.193 kb on + strandat 5376.290 kb on + strand, within BT4111at 5376.291 kb on - strand, within BT4111at 5376.291 kb on - strand, within BT4111at 5376.308 kb on - strand, within BT4111at 5376.308 kb on - strand, within BT4111at 5376.415 kb on - strand, within BT4111at 5376.443 kb on + strand, within BT4111at 5376.444 kb on - strand, within BT4111at 5376.444 kb on - strand, within BT4111at 5376.555 kb on - strand, within BT4111at 5376.611 kb on - strand, within BT4111at 5376.617 kb on - strand, within BT4111at 5376.617 kb on - strand, within BT4111at 5376.640 kb on + strand, within BT4111at 5376.640 kb on + strand, within BT4111at 5376.641 kb on - strand, within BT4111at 5376.700 kb on + strand, within BT4111at 5376.707 kb on + strand, within BT4111at 5376.707 kb on + strand, within BT4111at 5376.762 kb on + strand, within BT4111at 5376.780 kb on + strand, within BT4111at 5376.781 kb on - strand, within BT4111at 5376.869 kb on - strand, within BT4111at 5376.872 kb on - strand, within BT4111at 5376.926 kb on - strand, within BT4111at 5376.926 kb on - strand, within BT4111at 5376.928 kb on - strand, within BT4111at 5376.928 kb on - strand, within BT4111at 5376.928 kb on - strand, within BT4111at 5376.933 kb on + strand, within BT4111at 5376.933 kb on + strand, within BT4111at 5376.995 kb on + strand, within BT4111at 5377.039 kb on - strand, within BT4111at 5377.039 kb on - strand, within BT4111at 5377.057 kb on + strand, within BT4111at 5377.081 kb on + strand, within BT4111at 5377.082 kb on - strand, within BT4111at 5377.108 kb on - strand, within BT4111at 5377.157 kb on + strand, within BT4111at 5377.309 kb on + strand, within BT4111at 5377.309 kb on + strand, within BT4111at 5377.316 kb on - strand, within BT4111at 5377.420 kb on + strand, within BT4111at 5377.421 kb on - strandat 5377.427 kb on + strand, within BT4111at 5377.462 kb on + strand, within BT4111at 5377.466 kb on + strand, within BT4111at 5377.466 kb on + strand, within BT4111at 5377.466 kb on + strand, within BT4111at 5377.467 kb on - strand, within BT4111at 5377.467 kb on - strand, within BT4111at 5377.489 kb on - strand, within BT4111at 5377.490 kb on + strand, within BT4111at 5377.490 kb on + strand, within BT4111at 5377.491 kb on - strand, within BT4111at 5377.499 kb on + strand, within BT4111at 5377.499 kb on + strand, within BT4111at 5377.519 kb on + strand, within BT4111at 5377.553 kb on + strand, within BT4111at 5377.604 kb on - strand, within BT4111at 5377.688 kb on - strand, within BT4111at 5377.688 kb on - strand, within BT4111at 5377.736 kb on - strand, within BT4111at 5377.782 kb on + strand, within BT4111at 5377.782 kb on + strand, within BT4111at 5377.789 kb on + strand, within BT4111at 5377.790 kb on - strand, within BT4111at 5378.003 kb on - strand, within BT4111at 5378.047 kb on + strand, within BT4111at 5378.047 kb on + strand, within BT4111at 5378.048 kb on - strand, within BT4111at 5378.051 kb on - strand, within BT4111at 5378.086 kb on + strand, within BT4111at 5378.087 kb on - strand, within BT4111at 5378.108 kb on - strand, within BT4111at 5378.108 kb on - strand, within BT4111at 5378.168 kb on - strand, within BT4111at 5378.194 kb on + strand, within BT4111at 5378.221 kb on - strand, within BT4111at 5378.296 kb on + strand, within BT4111at 5378.347 kb on - strand, within BT4111at 5378.347 kb on - strand, within BT4111at 5378.347 kb on - strand, within BT4111at 5378.347 kb on - strand, within BT4111at 5378.352 kb on - strand, within BT4111at 5378.417 kb on + strand, within BT4111at 5378.419 kb on + strand, within BT4111at 5378.420 kb on - strand, within BT4111at 5378.443 kb on + strand, within BT4111at 5378.555 kb on + strand, within BT4111at 5378.556 kb on - strand, within BT4111at 5378.637 kb on + strand, within BT4111at 5378.682 kb on + strand, within BT4111at 5378.797 kb on + strand, within BT4111at 5378.807 kb on - strand, within BT4111at 5378.807 kb on - strand, within BT4111at 5379.004 kb on + strand, within BT4111at 5379.051 kb on - strand, within BT4111at 5379.051 kb on - strand, within BT4111at 5379.266 kb on - strand, within BT4111at 5379.341 kb on - strand, within BT4111at 5379.412 kb on + strand, within BT4111at 5379.511 kb on + strand, within BT4111at 5379.511 kb on + strand, within BT4111at 5379.522 kb on + strand, within BT4111at 5379.586 kb on - strand, within BT4111at 5379.643 kb on + strand, within BT4111at 5379.709 kb on + strand, within BT4111at 5379.724 kb on + strand, within BT4111at 5379.725 kb on - strand, within BT4111at 5379.730 kb on + strand, within BT4111at 5379.731 kb on - strand, within BT4111at 5379.742 kb on + strand, within BT4111at 5379.828 kb on - strand, within BT4111at 5379.884 kb on + strand, within BT4111at 5379.977 kb on - strandat 5380.015 kb on + strandat 5380.025 kb on - strandat 5380.231 kb on + strandat 5380.232 kb on - strandat 5380.247 kb on + strandat 5380.249 kb on + strandat 5380.255 kb on - strandat 5380.373 kb on + strandat 5380.390 kb on - strandat 5380.520 kb on + strandat 5380.541 kb on + strandat 5380.555 kb on + strandat 5380.555 kb on + strandat 5380.556 kb on - strandat 5380.668 kb on - strandat 5380.706 kb on - strandat 5380.738 kb on - strandat 5380.782 kb on - strandat 5380.889 kb on - strandat 5380.919 kb on + strandat 5380.960 kb on - strandat 5381.003 kb on + strandat 5381.022 kb on - strandat 5381.043 kb on + strandat 5381.056 kb on + strandat 5381.098 kb on - strandat 5381.100 kb on - strandat 5381.142 kb on - strandat 5381.149 kb on + strandat 5381.150 kb on - strandat 5381.166 kb on - strandat 5381.192 kb on - strandat 5381.203 kb on + strandat 5381.240 kb on - strandat 5381.306 kb on + strandat 5381.311 kb on - strandat 5381.311 kb on - strandat 5381.311 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
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5,374,830 + BT4110 0.43 -0.6
5,374,830 + BT4110 0.43 -1.4
5,374,848 + BT4110 0.44 -1.0
5,374,849 - BT4110 0.44 -0.0
5,374,849 - BT4110 0.44 -2.4
5,374,849 - BT4110 0.44 +1.0
5,374,935 - BT4110 0.50 -0.4
5,374,935 - BT4110 0.50 -0.0
5,374,941 - BT4110 0.50 -0.9
5,375,000 + BT4110 0.54 -1.2
5,375,001 - BT4110 0.54 +1.0
5,375,078 + BT4110 0.59 -0.0
5,375,112 + BT4110 0.61 -0.0
5,375,113 - BT4110 0.61 -0.0
5,375,253 - BT4110 0.69 -0.4
5,375,256 + BT4110 0.70 -0.0
5,375,257 - BT4110 0.70 +1.3
5,375,257 - BT4110 0.70 -2.1
5,375,277 + BT4110 0.71 -0.7
5,375,292 + BT4110 0.72 -2.0
5,375,332 + BT4110 0.74 -1.1
5,375,352 + BT4110 0.76 -1.4
5,375,355 - BT4110 0.76 +1.1
5,375,361 - BT4110 0.76 -1.0
5,375,418 + BT4110 0.80 -1.9
5,375,419 - BT4110 0.80 -1.1
5,375,467 + BT4110 0.83 +1.5
5,375,467 + BT4110 0.83 -1.0
5,375,468 - BT4110 0.83 -1.2
5,375,468 - BT4110 0.83 -1.6
5,375,506 + BT4110 0.85 -2.4
5,375,507 - BT4110 0.85 -3.7
5,375,535 - BT4110 0.87 -1.1
5,375,601 + -1.4
5,375,742 + -1.0
5,375,754 - -0.0
5,375,762 - -1.1
5,375,780 - -1.5
5,375,805 + +1.0
5,375,806 - -0.6
5,375,806 - -0.5
5,375,809 - +2.0
5,375,815 - -1.6
5,375,827 - -0.0
5,375,833 - -0.9
5,375,859 + -1.6
5,376,017 + -0.2
5,376,039 - -1.2
5,376,075 - +1.5
5,376,075 - +1.0
5,376,103 - -2.7
5,376,187 + -1.3
5,376,187 + -1.0
5,376,188 - +1.0
5,376,188 - -2.0
5,376,188 - +1.0
5,376,192 - -0.0
5,376,193 + -0.0
5,376,290 + BT4111 0.11 -1.0
5,376,291 - BT4111 0.11 -1.4
5,376,291 - BT4111 0.11 -1.2
5,376,308 - BT4111 0.11 -0.6
5,376,308 - BT4111 0.11 -1.1
5,376,415 - BT4111 0.13 -2.0
5,376,443 + BT4111 0.14 -0.8
5,376,444 - BT4111 0.14 -1.0
5,376,444 - BT4111 0.14 -1.0
5,376,555 - BT4111 0.16 +0.5
5,376,611 - BT4111 0.18 -2.2
5,376,617 - BT4111 0.18 -1.0
5,376,617 - BT4111 0.18 -1.6
5,376,640 + BT4111 0.18 -2.5
5,376,640 + BT4111 0.18 -0.0
5,376,641 - BT4111 0.18 -0.5
5,376,700 + BT4111 0.20 -1.1
5,376,707 + BT4111 0.20 -0.5
5,376,707 + BT4111 0.20 -1.0
5,376,762 + BT4111 0.21 -1.2
5,376,780 + BT4111 0.21 -2.0
5,376,781 - BT4111 0.21 -1.6
5,376,869 - BT4111 0.23 -2.0
5,376,872 - BT4111 0.23 -1.2
5,376,926 - BT4111 0.25 +0.7
5,376,926 - BT4111 0.25 -0.9
5,376,928 - BT4111 0.25 -1.7
5,376,928 - BT4111 0.25 -1.4
5,376,928 - BT4111 0.25 -0.6
5,376,933 + BT4111 0.25 -1.0
5,376,933 + BT4111 0.25 -2.0
5,376,995 + BT4111 0.26 -0.0
5,377,039 - BT4111 0.27 +1.0
5,377,039 - BT4111 0.27 -1.4
5,377,057 + BT4111 0.27 -0.7
5,377,081 + BT4111 0.28 -3.0
5,377,082 - BT4111 0.28 -3.0
5,377,108 - BT4111 0.29 +1.3
5,377,157 + BT4111 0.30 -1.0
5,377,309 + BT4111 0.33 -0.6
5,377,309 + BT4111 0.33 -1.4
5,377,316 - BT4111 0.33 -0.0
5,377,420 + BT4111 0.35 -0.3
5,377,421 - -0.0
5,377,427 + BT4111 0.36 +0.2
5,377,462 + BT4111 0.36 -1.6
5,377,466 + BT4111 0.37 -2.0
5,377,466 + BT4111 0.37 +0.3
5,377,466 + BT4111 0.37 -0.3
5,377,467 - BT4111 0.37 -2.0
5,377,467 - BT4111 0.37 -1.0
5,377,489 - BT4111 0.37 -0.5
5,377,490 + BT4111 0.37 -0.0
5,377,490 + BT4111 0.37 -1.4
5,377,491 - BT4111 0.37 +1.5
5,377,499 + BT4111 0.37 +1.0
5,377,499 + BT4111 0.37 -0.0
5,377,519 + BT4111 0.38 -0.0
5,377,553 + BT4111 0.38 -0.0
5,377,604 - BT4111 0.40 -0.0
5,377,688 - BT4111 0.41 +0.5
5,377,688 - BT4111 0.41 -1.0
5,377,736 - BT4111 0.42 -1.6
5,377,782 + BT4111 0.43 -0.9
5,377,782 + BT4111 0.43 -1.0
5,377,789 + BT4111 0.44 -0.0
5,377,790 - BT4111 0.44 -1.6
5,378,003 - BT4111 0.48 -0.6
5,378,047 + BT4111 0.49 +0.4
5,378,047 + BT4111 0.49 +1.0
5,378,048 - BT4111 0.49 -0.0
5,378,051 - BT4111 0.49 -0.6
5,378,086 + BT4111 0.50 -0.5
5,378,087 - BT4111 0.50 -2.7
5,378,108 - BT4111 0.51 -0.0
5,378,108 - BT4111 0.51 -0.9
5,378,168 - BT4111 0.52 -1.6
5,378,194 + BT4111 0.53 -1.0
5,378,221 - BT4111 0.53 -0.0
5,378,296 + BT4111 0.55 -0.8
5,378,347 - BT4111 0.56 -0.0
5,378,347 - BT4111 0.56 -0.0
5,378,347 - BT4111 0.56 -1.6
5,378,347 - BT4111 0.56 -0.0
5,378,352 - BT4111 0.56 -1.0
5,378,417 + BT4111 0.57 -2.7
5,378,419 + BT4111 0.58 +0.1
5,378,420 - BT4111 0.58 -1.9
5,378,443 + BT4111 0.58 -0.0
5,378,555 + BT4111 0.61 -2.8
5,378,556 - BT4111 0.61 -0.9
5,378,637 + BT4111 0.62 -1.4
5,378,682 + BT4111 0.63 -1.1
5,378,797 + BT4111 0.66 -0.6
5,378,807 - BT4111 0.66 -1.0
5,378,807 - BT4111 0.66 -1.0
5,379,004 + BT4111 0.70 -0.8
5,379,051 - BT4111 0.71 -1.0
5,379,051 - BT4111 0.71 -0.0
5,379,266 - BT4111 0.76 -1.6
5,379,341 - BT4111 0.78 -1.3
5,379,412 + BT4111 0.79 -1.9
5,379,511 + BT4111 0.82 +1.0
5,379,511 + BT4111 0.82 -2.4
5,379,522 + BT4111 0.82 -1.2
5,379,586 - BT4111 0.83 -1.0
5,379,643 + BT4111 0.85 -1.0
5,379,709 + BT4111 0.86 -0.6
5,379,724 + BT4111 0.86 -2.8
5,379,725 - BT4111 0.86 +1.0
5,379,730 + BT4111 0.86 -1.6
5,379,731 - BT4111 0.86 -1.5
5,379,742 + BT4111 0.87 -1.0
5,379,828 - BT4111 0.89 -0.0
5,379,884 + BT4111 0.90 -0.5
5,379,977 - -3.9
5,380,015 + -1.8
5,380,025 - -0.8
5,380,231 + -1.0
5,380,232 - -2.0
5,380,247 + -0.0
5,380,249 + -1.2
5,380,255 - -1.9
5,380,373 + -0.0
5,380,390 - -0.0
5,380,520 + -1.0
5,380,541 + -1.4
5,380,555 + -0.0
5,380,555 + -0.0
5,380,556 - -2.5
5,380,668 - -0.5
5,380,706 - -1.6
5,380,738 - -0.0
5,380,782 - -1.1
5,380,889 - -1.0
5,380,919 + -0.0
5,380,960 - -1.8
5,381,003 + -1.6
5,381,022 - +0.4
5,381,043 + -0.0
5,381,056 + -1.1
5,381,098 - -1.6
5,381,100 - -0.3
5,381,142 - -1.8
5,381,149 + -1.0
5,381,150 - -0.0
5,381,166 - -1.1
5,381,192 - +0.5
5,381,203 + -0.0
5,381,240 - -3.4
5,381,306 + -0.0
5,381,311 - -1.4
5,381,311 - -1.0
5,381,311 - -1.6

Or see this region's nucleotide sequence