Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3755

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
4,874,371	+		BT3754	0.31	-0.0
4,874,371	+		BT3754	0.31	-1.6
4,874,371	+		BT3754	0.31	+0.6
4,874,378	-		BT3754	0.31	-3.3
4,874,381	-		BT3754	0.32	+1.0
4,874,382	+		BT3754	0.32	-1.0
4,874,495	-		BT3754	0.41	-1.1
4,874,575	+		BT3754	0.48	-1.0
4,874,589	+		BT3754	0.49	-1.1
4,874,595	-		BT3754	0.50	-0.0
4,874,657	-		BT3754	0.55	-1.8
4,874,698	+		BT3754	0.58	-1.6
4,874,794	+		BT3754	0.66	+2.0
4,874,795	-		BT3754	0.66	-0.6
4,874,820	+		BT3754	0.69	-1.3
4,874,820	+		BT3754	0.69	-1.1
4,874,821	-		BT3754	0.69	-1.3
4,874,844	-		BT3754	0.71	-1.0
4,874,854	+		BT3754	0.71	+1.0
4,874,854	+		BT3754	0.71	+1.6
4,874,857	+		BT3754	0.72	-0.8
4,874,890	+		BT3754	0.74	-1.6
4,874,890	+		BT3754	0.74	+1.0
4,874,893	+		BT3754	0.75	-0.3
4,874,915	-		BT3754	0.77	-0.8
4,874,923	+		BT3754	0.77	-0.0
4,874,924	-		BT3754	0.77	+2.0
4,874,924	-		BT3754	0.77	-1.0
4,874,927	-		BT3754	0.78	+1.6
4,874,935	-		BT3754	0.78	-0.0
4,874,956	+		BT3754	0.80	+0.4
4,875,014	-		BT3754	0.85	-0.6
4,875,112	+				-1.9
4,875,167	+				-1.0
4,875,168	-				-0.0
4,875,184	+				-1.0
4,875,238	+				-1.0
4,875,244	+				-0.7
4,875,302	+				-0.7
4,875,309	+				-0.3
4,875,403	+				-1.0
4,875,404	-				-0.5
4,875,473	-				-2.0
4,875,473	-				+0.0
4,875,475	-		BT3755	0.10	+0.3
4,875,488	+		BT3755	0.11	-1.6
4,875,488	+		BT3755	0.11	-1.9
4,875,488	+		BT3755	0.11	-1.6
4,875,489	-		BT3755	0.11	-0.4
4,875,503	-		BT3755	0.12	-1.0
4,875,506	+		BT3755	0.12	-2.0
4,875,551	+		BT3755	0.15	+0.6
4,875,551	+		BT3755	0.15	-0.3
4,875,623	+		BT3755	0.19	+1.2
4,875,623	+		BT3755	0.19	-0.4
4,875,642	-		BT3755	0.20	-1.0
4,875,642	-		BT3755	0.20	-2.0
4,875,678	-		BT3755	0.22	-2.0
4,875,691	-		BT3755	0.23	-2.0
4,875,691	-		BT3755	0.23	-0.7
4,875,694	-		BT3755	0.23	-1.6
4,875,694	-		BT3755	0.23	-0.7
4,875,694	-		BT3755	0.23	-1.3
4,875,722	-		BT3755	0.25	-1.3
4,875,739	-		BT3755	0.26	+1.0
4,875,742	-		BT3755	0.26	-1.0
4,875,850	-		BT3755	0.33	-2.8
4,876,041	+		BT3755	0.44	+0.5
4,876,041	+		BT3755	0.44	-1.6
4,876,042	-		BT3755	0.44	-3.0
4,876,042	-		BT3755	0.44	-0.7
4,876,042	-		BT3755	0.44	-1.2
4,876,042	-		BT3755	0.44	-1.1
4,876,045	+		BT3755	0.45	+0.6
4,876,045	+		BT3755	0.45	-0.6
4,876,045	+		BT3755	0.45	-1.9
4,876,046	-		BT3755	0.45	-2.0
4,876,162	-		BT3755	0.52	-1.0
4,876,312	+		BT3755	0.61	-0.6
4,876,312	+		BT3755	0.61	-1.0
4,876,313	-		BT3755	0.61	-0.3
4,876,326	-		BT3755	0.61	+1.0
4,876,333	+		BT3755	0.62	-1.6
4,876,334	-		BT3755	0.62	-1.0
4,876,334	-		BT3755	0.62	-0.7
4,876,387	+		BT3755	0.65	+0.0
4,876,588	-		BT3755	0.77	-0.6
4,876,588	-		BT3755	0.77	+0.0
4,876,595	-		BT3755	0.78	-0.3
4,876,646	-		BT3755	0.81	-1.0
4,876,737	+		BT3755	0.86	-0.6
4,876,856	+				-0.6
4,876,857	-				-1.6
4,876,859	+				-0.9
4,876,896	-				+0.0
4,876,937	-				+0.0
4,876,937	-				-1.1
4,876,937	-				-1.2
4,876,958	+				-1.0
4,876,958	+				+0.0
4,876,959	-				-1.1
4,876,977	-				-1.0
4,877,047	+		BT3756	0.14	-0.7
4,877,102	+		BT3756	0.24	-1.8
4,877,149	+				-2.3
4,877,355	-		BT3756	0.69	+0.0
4,877,362	-		BT3756	0.70	-2.8
4,877,375	+		BT3756	0.73	-1.0
4,877,375	+		BT3756	0.73	-2.2
4,877,376	-		BT3756	0.73	-2.0
4,877,417	-		BT3756	0.80	-1.4
4,877,430	+		BT3756	0.83	-2.1
4,877,463	+		BT3756	0.89	-2.0
4,877,463	+		BT3756	0.89	-1.0
4,877,473	-				-0.9
4,877,510	+				+0.0
4,877,566	+				-1.6
4,877,643	-		BT3757	0.10	-3.9
4,877,659	+		BT3757	0.12	-1.6
4,877,706	+		BT3757	0.18	-3.2
4,877,737	-		BT3757	0.22	-2.5
4,877,737	-		BT3757	0.22	-3.8
4,877,803	+		BT3757	0.31	-2.6
4,877,816	-		BT3757	0.32	-3.8
4,877,909	+		BT3757	0.44	-3.1