Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3566

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
4,614,194	+		BT3565	0.63	-0.0
4,614,300	-		BT3565	0.67	-1.1
4,614,302	+		BT3565	0.67	-0.2
4,614,302	+		BT3565	0.67	-0.0
4,614,303	-		BT3565	0.67	-0.3
4,614,309	-		BT3565	0.67	-1.1
4,614,342	+		BT3565	0.69	-0.6
4,614,380	+		BT3565	0.70	-0.0
4,614,381	-		BT3565	0.70	-0.8
4,614,427	-		BT3565	0.72	-1.3
4,614,427	-		BT3565	0.72	-1.3
4,614,453	-		BT3565	0.73	-2.3
4,614,559	+		BT3565	0.77	-2.0
4,614,560	-		BT3565	0.77	-0.4
4,614,589	-		BT3565	0.78	-1.8
4,614,589	-		BT3565	0.78	-1.0
4,614,598	+		BT3565	0.79	+1.6
4,614,599	-		BT3565	0.79	-1.3
4,614,599	-		BT3565	0.79	-0.0
4,614,599	-		BT3565	0.79	-1.3
4,614,666	+		BT3565	0.81	-0.0
4,614,666	+		BT3565	0.81	-1.6
4,614,694	-		BT3565	0.82	-0.6
4,614,748	-		BT3565	0.84	-1.6
4,614,806	+		BT3565	0.87	-1.3
4,614,807	-		BT3565	0.87	-0.7
4,614,807	-		BT3565	0.87	+0.4
4,614,817	-		BT3565	0.87	-0.0
4,614,817	-		BT3565	0.87	-1.0
4,614,818	+		BT3565	0.87	+1.6
4,614,819	-		BT3565	0.87	-1.0
4,614,822	-		BT3565	0.87	-1.6
4,614,853	-		BT3565	0.89	-1.2
4,614,853	-		BT3565	0.89	-0.0
4,614,858	-		BT3565	0.89	-1.0
4,614,912	+				-1.6
4,614,913	-				-0.9
4,614,923	+				-1.0
4,614,925	+				-1.2
4,614,925	+				-0.0
4,614,937	-				-0.7
4,614,946	-				-0.6
4,614,957	-				-1.0
4,615,082	+				-1.4
4,615,083	-				-1.0
4,615,122	-				-2.3
4,615,144	-				-1.0
4,615,185	+				-1.2
4,615,186	-				+0.6
4,615,196	+				-0.8
4,615,220	+				-0.6
4,615,233	+				-0.7
4,615,234	-				-1.0
4,615,263	+				-0.5
4,615,280	-				-1.0
4,615,367	-		BT3566	0.14	-0.0
4,615,367	-		BT3566	0.14	-0.8
4,615,403	+		BT3566	0.17	+1.6
4,615,404	-		BT3566	0.17	-1.2
4,615,404	-		BT3566	0.17	-0.8
4,615,404	-		BT3566	0.17	-2.3
4,615,445	-		BT3566	0.20	-1.0
4,615,535	-		BT3566	0.27	-1.2
4,615,535	-		BT3566	0.27	-1.2
4,615,577	-		BT3566	0.30	+0.4
4,615,642	+		BT3566	0.34	-0.0
4,615,697	-		BT3566	0.38	-0.0
4,615,697	-		BT3566	0.38	-1.7
4,615,697	-		BT3566	0.38	-1.7
4,615,766	+		BT3566	0.43	+1.0
4,615,858	+		BT3566	0.50	-2.8
4,615,858	+		BT3566	0.50	+1.2
4,615,858	+		BT3566	0.50	-2.0
4,615,859	-		BT3566	0.50	-1.2
4,615,859	-		BT3566	0.50	-0.3
4,615,862	+		BT3566	0.50	-0.0
4,615,888	-		BT3566	0.52	-2.0
4,615,913	-		BT3566	0.54	-0.6
4,615,913	-		BT3566	0.54	-1.6
4,615,913	-		BT3566	0.54	-1.7
4,615,935	+		BT3566	0.56	-1.0
4,615,987	-		BT3566	0.60	-2.0
4,616,038	+		BT3566	0.63	-0.0
4,616,039	-		BT3566	0.63	+0.4
4,616,039	-		BT3566	0.63	-0.0
4,616,042	-		BT3566	0.64	-0.9
4,616,086	-		BT3566	0.67	-1.2
4,616,301	+		BT3566	0.83	-1.1
4,616,389	+		BT3566	0.89	-0.8
4,616,496	+				-1.0
4,616,516	+				-0.6
4,616,519	-				+1.0
4,616,615	+				-0.7
4,616,647	+				-1.2
4,616,738	+				-5.6
4,616,754	+				-3.0
4,616,764	-				-1.0
4,616,889	+				-5.9
4,616,890	-				-3.7
4,616,890	-				-2.0
4,616,974	+		BT3567	0.14	-3.8
4,616,975	-		BT3567	0.14	-1.0
4,617,010	+		BT3567	0.15	-3.9
4,617,013	+		BT3567	0.15	-4.5
4,617,015	+		BT3567	0.15	-1.0
4,617,016	-		BT3567	0.15	-5.3
4,617,066	+		BT3567	0.18	-2.3
4,617,125	-		BT3567	0.20	-1.0
4,617,125	-		BT3567	0.20	-0.0
4,617,132	+		BT3567	0.20	-4.5
4,617,135	+		BT3567	0.21	-4.3
4,617,252	-		BT3567	0.26	-2.6
4,617,315	-		BT3567	0.28	-2.3
4,617,315	-				-1.6
4,617,318	-		BT3567	0.28	-0.0
4,617,448	+		BT3567	0.34	-1.0
4,617,449	-		BT3567	0.34	-3.0
4,617,518	+		BT3567	0.37	-1.0