Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2817

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
3,499,650	-		BT2816	0.68	-2.8
3,499,671	-		BT2816	0.68	-1.2
3,499,717	+		BT2816	0.70	-1.7
3,499,717	+		BT2816	0.70	+0.3
3,499,722	-		BT2816	0.70	-1.0
3,499,725	+		BT2816	0.70	-0.7
3,499,813	+		BT2816	0.73	-0.6
3,499,814	-		BT2816	0.73	-0.9
3,499,817	+		BT2816	0.73	-0.8
3,499,838	+		BT2816	0.74	+1.6
3,499,912	+		BT2816	0.76	-1.0
3,499,929	-		BT2816	0.77	-0.7
3,499,931	+		BT2816	0.77	-1.1
3,499,931	+		BT2816	0.77	-2.3
3,499,932	-		BT2816	0.77	-0.6
3,499,965	-		BT2816	0.78	-0.0
3,499,965	-		BT2816	0.78	-2.8
3,499,965	-		BT2816	0.78	-0.7
3,499,967	-		BT2816	0.78	-0.0
3,499,969	+		BT2816	0.78	-0.0
3,499,969	+		BT2816	0.78	-0.8
3,499,969	+		BT2816	0.78	-1.0
3,499,970	-		BT2816	0.78	-0.0
3,499,970	-		BT2816	0.78	-2.0
3,499,970	-		BT2816	0.78	-1.0
3,500,053	-		BT2816	0.81	-3.7
3,500,093	+		BT2816	0.82	-1.3
3,500,094	-		BT2816	0.82	-2.8
3,500,125	-		BT2816	0.83	-1.3
3,500,187	+		BT2816	0.85	-1.2
3,500,187	+		BT2816	0.85	-1.8
3,500,187	+		BT2816	0.85	+0.4
3,500,279	+		BT2816	0.89	-0.0
3,500,463	-				-1.1
3,500,463	-				-1.0
3,500,499	+				-1.0
3,500,501	+				-1.0
3,500,502	-				-1.4
3,500,502	-				-0.0
3,500,537	+				-0.0
3,500,561	+				-1.1
3,500,605	-				-2.2
3,500,651	+				-0.6
3,500,651	+				-1.3
3,500,652	-				-1.4
3,500,654	-				-1.4
3,500,655	+				-0.0
3,500,655	+				-0.4
3,500,656	-				-0.7
3,500,656	-				-1.3
3,500,656	-				-1.5
3,500,669	-				-1.5
3,500,763	-				-1.6
3,500,765	-				+1.6
3,500,847	-		BT2817	0.12	-0.0
3,500,875	+		BT2817	0.14	-1.1
3,500,900	+		BT2817	0.15	-1.9
3,500,901	-		BT2817	0.15	+2.3
3,500,901	-		BT2817	0.15	+1.6
3,500,901	-		BT2817	0.15	-1.0
3,500,905	-		BT2817	0.16	-2.0
3,500,905	-		BT2817	0.16	-1.4
3,500,940	-		BT2817	0.18	-1.0
3,500,940	-		BT2817	0.18	-2.4
3,500,940	-		BT2817	0.18	-1.6
3,500,942	-		BT2817	0.18	-1.1
3,500,942	-		BT2817	0.18	-0.6
3,500,963	+		BT2817	0.19	-0.5
3,500,991	-		BT2817	0.21	-1.0
3,501,095	+		BT2817	0.27	-0.6
3,501,098	+		BT2817	0.27	-1.3
3,501,125	+		BT2817	0.28	-1.6
3,501,128	-		BT2817	0.29	-1.1
3,501,147	+		BT2817	0.30	-1.4
3,501,270	-		BT2817	0.37	+1.0
3,501,276	+		BT2817	0.37	-0.4
3,501,276	+		BT2817	0.37	-1.0
3,501,437	-		BT2817	0.47	-1.0
3,501,452	-		BT2817	0.47	-0.0
3,501,483	+		BT2817	0.49	+0.1
3,501,521	+		BT2817	0.51	-2.0
3,501,616	-		BT2817	0.57	-0.0
3,501,618	+		BT2817	0.57	-1.0
3,501,618	+		BT2817	0.57	-0.8
3,501,619	-		BT2817	0.57	-0.0
3,501,626	+		BT2817	0.57	-1.0
3,501,628	+		BT2817	0.58	-1.0
3,501,628	+		BT2817	0.58	-1.0
3,501,629	-		BT2817	0.58	-1.0
3,501,629	-		BT2817	0.58	-1.3
3,501,644	+		BT2817	0.59	-1.2
3,501,644	+		BT2817	0.59	-1.3
3,501,648	+		BT2817	0.59	-0.0
3,501,649	-		BT2817	0.59	-1.9
3,501,649	-		BT2817	0.59	-0.0
3,501,649	-		BT2817	0.59	-1.6
3,501,717	-		BT2817	0.63	+1.0
3,501,736	+		BT2817	0.64	-1.6
3,501,808	+		BT2817	0.68	+1.0
3,501,809	-		BT2817	0.68	+1.0
3,501,824	+		BT2817	0.69	-0.3
3,501,878	+		BT2817	0.72	-0.9
3,501,878	+		BT2817	0.72	-2.3
3,501,878	+		BT2817	0.72	-1.4
3,502,007	+		BT2817	0.80	-0.4
3,502,007	+		BT2817	0.80	+1.0
3,502,007	+		BT2817	0.80	-1.0
3,502,043	+		BT2817	0.82	-0.4
3,502,048	+		BT2817	0.82	-1.0
3,502,079	+		BT2817	0.84	-1.8
3,502,080	-		BT2817	0.84	-1.2
3,502,141	+		BT2817	0.87	-1.0
3,502,161	-		BT2817	0.89	-1.8
3,502,179	+		BT2817	0.90	-0.7
3,502,189	+				-0.0
3,502,229	+				+0.6
3,502,230	-				-1.3
3,502,231	+				-0.8
3,502,270	+				-0.6
3,502,273	+				-2.0
3,502,282	+				+1.0
3,502,295	+				-1.7
3,502,296	-				-2.3
3,502,298	+				-1.2
3,502,312	+				-1.4
3,502,341	+				-0.0
3,502,342	-				-2.4
3,502,367	-				-2.0
3,502,367	-				-0.0
3,502,413	+				-0.3
3,502,413	+				+0.2
3,502,443	-				-0.0
3,502,453	-				-0.1
3,502,498	+				-1.6
3,502,509	+				-0.0
3,502,553	-				-0.5
3,502,599	-				-2.3
3,502,622	-				-1.0
3,502,644	-				-0.7
3,502,644	-				+0.1
3,502,718	+				-0.0
3,502,719	-				-1.2
3,502,784	-				-0.2
3,502,811	+				-1.6
3,502,811	+				+0.6
3,502,811	+				+1.0
3,502,847	-				-1.6
3,502,847	-				-0.5
3,502,889	-				-0.4
3,502,889	-				-1.6
3,502,889	-				-0.0
3,502,946	-				+1.0
3,503,001	+				-1.1
3,503,001	+				-2.0
3,503,093	-		BT2818	0.11	-0.5
3,503,182	+		BT2818	0.14	-0.0
3,503,217	+		BT2818	0.15	-1.0
3,503,218	-		BT2818	0.15	-1.6
3,503,218	-		BT2818	0.15	-1.6
3,503,227	-		BT2818	0.15	-1.3
3,503,268	-		BT2818	0.16	+1.6
3,503,268	-		BT2818	0.16	-0.4
3,503,268	-		BT2818	0.16	-0.2
3,503,272	-		BT2818	0.17	+1.6
3,503,289	+		BT2818	0.17	-0.2
3,503,331	+		BT2818	0.18	-2.0
3,503,332	-		BT2818	0.18	+1.0