Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2663

Experiment: b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
3,317,932	+		BT2662	0.41	-1.3
3,317,933	-		BT2662	0.41	-1.0
3,317,946	+		BT2662	0.42	-1.4
3,317,946	+		BT2662	0.42	-1.6
3,317,947	-		BT2662	0.42	-1.8
3,317,981	+		BT2662	0.44	-1.0
3,317,982	-		BT2662	0.44	-0.0
3,318,029	+		BT2662	0.48	-1.6
3,318,029	+		BT2662	0.48	-1.0
3,318,030	-		BT2662	0.48	-0.4
3,318,037	-		BT2662	0.48	-1.0
3,318,066	+		BT2662	0.50	-1.0
3,318,067	-		BT2662	0.50	-1.1
3,318,111	+		BT2662	0.53	+0.6
3,318,144	-		BT2662	0.55	-1.3
3,318,161	+		BT2662	0.56	-2.6
3,318,162	-		BT2662	0.56	-2.0
3,318,184	+				-0.0
3,318,184	+		BT2662	0.58	+0.6
3,318,185	-		BT2662	0.58	-1.3
3,318,185	-		BT2662	0.58	-2.2
3,318,188	+		BT2662	0.58	+1.0
3,318,189	-		BT2662	0.58	-1.5
3,318,241	+		BT2662	0.61	-1.3
3,318,242	-		BT2662	0.61	-0.5
3,318,265	-		BT2662	0.63	-0.4
3,318,276	-		BT2662	0.64	-0.7
3,318,314	+		BT2662	0.66	-1.7
3,318,390	+		BT2662	0.71	-1.5
3,318,391	-		BT2662	0.71	-0.6
3,318,436	+		BT2662	0.74	-0.7
3,318,437	-		BT2662	0.74	-1.1
3,318,437	-		BT2662	0.74	-1.5
3,318,437	-		BT2662	0.74	+1.0
3,318,454	+		BT2662	0.75	-1.2
3,318,455	-		BT2662	0.75	-0.0
3,318,501	-		BT2662	0.78	-0.8
3,318,502	+		BT2662	0.79	-0.0
3,318,503	-		BT2662	0.79	-2.5
3,318,503	-		BT2662	0.79	-0.9
3,318,503	-		BT2662	0.79	-1.4
3,318,503	-		BT2662	0.79	-0.7
3,318,587	+		BT2662	0.84	-1.6
3,318,587	+		BT2662	0.84	-3.0
3,318,589	+		BT2662	0.84	-0.0
3,318,589	+		BT2662	0.84	-1.1
3,318,659	+		BT2662	0.89	-0.8
3,318,722	+				-0.8
3,318,722	+				-1.2
3,318,723	-				-0.9
3,318,723	-				-1.0
3,318,752	-				-0.0
3,318,759	+				-1.9
3,318,778	+				+1.2
3,318,778	+				-0.6
3,318,807	+				-1.6
3,318,826	+				-0.8
3,318,827	-				-0.8
3,318,827	-				-2.6
3,318,845	+				-0.5
3,318,846	-				-1.0
3,318,912	+				-1.4
3,318,925	+				-1.1
3,318,962	+				+0.2
3,318,963	-				-0.9
3,318,973	-				+1.0
3,318,973	-				-1.0
3,318,995	-				-1.0
3,319,059	+				-3.2
3,319,059	+				-0.9
3,319,060	-				-0.0
3,319,063	+				-1.1
3,319,066	+				-2.3
3,319,067	-				-1.6
3,319,067	-				-1.0
3,319,108	+		BT2663	0.13	-1.0
3,319,153	+		BT2663	0.16	-0.1
3,319,154	-		BT2663	0.16	-0.3
3,319,231	+		BT2663	0.21	-1.0
3,319,232	-		BT2663	0.21	-1.0
3,319,335	-		BT2663	0.28	-1.2
3,319,348	+		BT2663	0.29	-1.8
3,319,395	-		BT2663	0.32	-1.7
3,319,406	+		BT2663	0.33	-0.0
3,319,406	+		BT2663	0.33	+1.0
3,319,409	-		BT2663	0.33	-1.0
3,319,442	-		BT2663	0.36	-0.0
3,319,482	+		BT2663	0.38	-1.6
3,319,504	-		BT2663	0.40	-1.0
3,319,509	+		BT2663	0.40	-1.6
3,319,523	-		BT2663	0.41	-0.8
3,319,576	+		BT2663	0.45	-2.0
3,319,577	-		BT2663	0.45	-0.9
3,319,581	-		BT2663	0.45	-0.7
3,319,581	-		BT2663	0.45	-1.6
3,319,582	+		BT2663	0.45	-0.0
3,319,582	+		BT2663	0.45	-1.6
3,319,582	+		BT2663	0.45	-0.0
3,319,591	+		BT2663	0.46	-1.6
3,319,642	-		BT2663	0.49	+0.8
3,319,672	+		BT2663	0.52	-4.5
3,319,673	-		BT2663	0.52	-0.9
3,319,673	-		BT2663	0.52	+0.4
3,319,676	+		BT2663	0.52	-0.7
3,319,676	+		BT2663	0.52	-1.0
3,319,677	-		BT2663	0.52	+0.6
3,319,678	+		BT2663	0.52	-0.3
3,319,678	+		BT2663	0.52	-2.0
3,319,679	-		BT2663	0.52	+0.0
3,319,786	+		BT2663	0.59	-0.0
3,319,837	+		BT2663	0.63	+1.0
3,319,896	-		BT2663	0.67	-1.2
3,319,899	+		BT2663	0.67	-2.0
3,319,900	-		BT2663	0.67	-0.0
3,319,976	-		BT2663	0.72	-1.5
3,319,987	+		BT2663	0.73	+1.8
3,319,997	-		BT2663	0.74	-1.3
3,319,997	-		BT2663	0.74	+0.3
3,320,027	+		BT2663	0.76	-0.7
3,320,143	+		BT2663	0.84	-1.3
3,320,143	+		BT2663	0.84	-2.0
3,320,144	-		BT2663	0.84	-0.8
3,320,181	+		BT2663	0.87	-0.8
3,320,232	+				-1.7
3,320,336	-				-0.0
3,320,393	+				-0.9
3,320,413	+				-1.0
3,320,435	+				-1.4
3,320,475	+				-1.6
3,320,505	-				-0.0
3,320,557	+		BT2664	0.15	-0.0
3,320,579	-		BT2664	0.18	-2.6
3,320,591	-		BT2664	0.19	-2.1
3,320,597	-		BT2664	0.20	-1.0
3,320,612	+		BT2664	0.21	+0.3
3,320,612	+		BT2664	0.21	-1.0
3,320,615	-		BT2664	0.21	-1.3
3,320,634	+		BT2664	0.23	-1.0
3,320,635	-		BT2664	0.24	-0.9
3,320,659	-		BT2664	0.26	-0.4
3,320,759	-		BT2664	0.37	-1.0
3,320,847	+		BT2664	0.46	-0.9
3,320,864	+		BT2664	0.48	-0.7
3,320,885	+		BT2664	0.50	-1.2
3,320,885	+		BT2664	0.50	-1.0
3,320,911	-		BT2664	0.53	-0.8
3,321,000	+		BT2664	0.62	-0.4
3,321,017	+		BT2664	0.64	-1.3
3,321,127	-		BT2664	0.76	-1.6
3,321,131	+		BT2664	0.76	+1.0
3,321,218	+		BT2664	0.85	-0.0
3,321,219	-		BT2664	0.85	-1.7
3,321,265	+				-0.0
3,321,266	-				-1.4
3,321,330	+				-0.4
3,321,359	+				-1.2
3,321,359	+				-2.6
3,321,360	-				-3.0
3,321,369	+				-1.6