Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1881

Experiment: D-Galactose 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1880 and BT1881 overlap by 62 nucleotidesBT1881 and BT1882 are separated by 15 nucleotides BT1880: BT1880 - tetraacyldisaccharide 4'-kinase (NCBI ptt file), at 2,367,050 to 2,368,192 BT1880 BT1881: BT1881 - purine nucleoside phosphorylase I (NCBI ptt file), at 2,368,131 to 2,368,940 BT1881 BT1882: BT1882 - putative thiamine-monophosphate kinase (NCBI ptt file), at 2,368,956 to 2,369,990 BT1882 Position (kb) 2368 2369Strain fitness (log2 ratio) -2 -1 0 1at 2368.386 kb on + strand, within BT1881at 2368.599 kb on + strand, within BT1881at 2368.619 kb on + strand, within BT1881at 2368.751 kb on + strand, within BT1881at 2368.757 kb on + strand, within BT1881at 2368.898 kb on + strandat 2368.938 kb on + strandat 2368.938 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 2.5 mg/ml (C)
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2,368,386 + BT1881 0.31 +0.5
2,368,599 + BT1881 0.58 -0.8
2,368,619 + BT1881 0.60 -0.2
2,368,751 + BT1881 0.77 -0.9
2,368,757 + BT1881 0.77 -0.6
2,368,898 + -2.4
2,368,938 + -1.0
2,368,938 + -2.1

Or see this region's nucleotide sequence