Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3752

Experiment: D-Fructose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Fructose 2.5 mg/ml (C)
4,870,304	+				-0.2
4,870,341	+				-0.5
4,870,352	-				+0.0
4,870,365	+				+0.6
4,870,385	-				-1.3
4,870,415	-				-1.0
4,870,416	+				-1.0
4,870,417	-				-0.6
4,870,475	-				-0.5
4,870,532	-				-0.9
4,870,565	+				-2.1
4,870,566	-				+1.6
4,870,616	-				+1.0
4,870,619	+				-0.8
4,870,628	-				+0.0
4,870,675	-		BT3751	0.12	-1.3
4,870,675	-		BT3751	0.12	-0.2
4,870,677	-		BT3751	0.12	+1.0
4,870,768	-		BT3751	0.26	+0.0
4,870,818	-		BT3751	0.33	-1.2
4,870,820	-		BT3751	0.33	+0.0
4,870,983	-		BT3751	0.58	-1.3
4,871,012	+		BT3751	0.62	+0.4
4,871,065	+		BT3751	0.70	-0.2
4,871,066	-		BT3751	0.70	-1.5
4,871,092	+		BT3751	0.74	-1.8
4,871,214	-				-1.1
4,871,214	-				+0.0
4,871,214	-				-0.5
4,871,216	-				-1.8
4,871,216	-				+0.0
4,871,216	-				-0.5
4,871,252	-				-1.3
4,871,272	-				-1.3
4,871,272	-				-0.2
4,871,276	-				-1.5
4,871,276	-				-3.0
4,871,321	-				-1.1
4,871,325	-				-1.7
4,871,340	-				-1.0
4,871,404	+				-0.7
4,871,428	-				-0.5
4,871,528	+		BT3752	0.16	-2.0
4,871,587	-		BT3752	0.20	-1.0
4,871,592	+		BT3752	0.20	-3.5
4,871,594	+		BT3752	0.20	-2.7
4,871,595	-		BT3752	0.20	-2.0
4,871,598	+		BT3752	0.20	-1.8
4,871,598	+		BT3752	0.20	+1.0
4,871,599	-		BT3752	0.20	-1.5
4,871,718	+		BT3752	0.28	+1.0
4,871,755	-		BT3752	0.30	-2.8
4,871,773	+		BT3752	0.31	-2.7
4,871,773	+		BT3752	0.31	+0.0
4,871,875	-		BT3752	0.38	+1.0
4,871,912	+		BT3752	0.40	-1.0
4,871,950	+		BT3752	0.43	-1.0
4,871,961	+		BT3752	0.43	-2.0
4,871,962	-		BT3752	0.44	-2.0
4,871,990	-		BT3752	0.45	-0.3
4,872,028	-		BT3752	0.48	+0.0
4,872,069	-		BT3752	0.50	-1.6
4,872,069	-		BT3752	0.50	-1.0
4,872,069	-		BT3752	0.50	+0.0
4,872,117	+		BT3752	0.53	-0.2
4,872,118	-		BT3752	0.54	-0.1
4,872,193	+		BT3752	0.58	-1.3
4,872,193	+		BT3752	0.58	+0.0
4,872,193	+		BT3752	0.58	-1.5
4,872,193	+		BT3752	0.58	-1.1
4,872,194	-		BT3752	0.58	-0.2
4,872,230	+		BT3752	0.61	-1.0
4,872,298	-		BT3752	0.65	-2.0
4,872,351	-		BT3752	0.68	-1.8
4,872,453	-		BT3752	0.75	-0.7
4,872,453	-		BT3752	0.75	-2.0
4,872,574	+		BT3752	0.83	-1.5
4,872,574	-		BT3752	0.83	-1.3
4,872,651	-		BT3752	0.88	-1.0
4,872,689	+				-0.4
4,872,689	+				-2.1
4,872,741	-				-0.4
4,872,798	-				-1.2
4,872,841	-				-0.5
4,872,843	+				-1.2
4,872,847	-				-1.0
4,872,862	+				-1.5
4,872,882	+				-0.4
4,872,884	+				-0.9
4,872,919	+				-1.0
4,872,922	-				-0.9
4,872,974	-				-1.0
4,872,974	-				-1.4
4,872,989	+		BT3753	0.11	-1.8
4,872,992	+		BT3753	0.11	-1.0
4,872,993	-		BT3753	0.11	+0.0
4,873,012	+		BT3753	0.13	-1.0
4,873,012	+		BT3753	0.13	-2.3
4,873,013	-		BT3753	0.13	-1.2
4,873,171	+		BT3753	0.27	-0.3
4,873,209	-		BT3753	0.31	+0.0
4,873,228	+		BT3753	0.33	-1.1
4,873,229	-		BT3753	0.33	-2.5
4,873,229	-		BT3753	0.33	-1.3
4,873,243	+		BT3753	0.34	-0.5
4,873,244	-		BT3753	0.34	+0.0
4,873,290	-		BT3753	0.38	-1.5
4,873,290	-		BT3753	0.38	-1.0
4,873,297	+		BT3753	0.39	-0.4
4,873,319	+		BT3753	0.41	-0.9
4,873,400	-		BT3753	0.48	-1.5
4,873,415	-		BT3753	0.49	-1.5
4,873,418	+		BT3753	0.50	+0.0
4,873,418	+		BT3753	0.50	+0.0
4,873,420	+		BT3753	0.50	-2.3
4,873,424	+		BT3753	0.50	-1.0
4,873,495	+		BT3753	0.57	+0.6
4,873,496	-		BT3753	0.57	-2.0
4,873,496	-		BT3753	0.57	-1.2
4,873,556	-		BT3753	0.62	-2.0
4,873,557	+		BT3753	0.62	+2.0
4,873,558	-		BT3753	0.62	+0.6
4,873,620	-		BT3753	0.68	-0.1
4,873,635	-		BT3753	0.69	-1.0
4,873,638	-		BT3753	0.70	-1.7
4,873,659	-		BT3753	0.72	-1.1
4,873,660	+		BT3753	0.72	-0.8
4,873,661	-		BT3753	0.72	-0.3
4,873,661	-		BT3753	0.72	-0.6
4,873,695	+		BT3753	0.75	+0.0
4,873,695	+		BT3753	0.75	+1.0
4,873,820	+		BT3753	0.86	+0.0
4,873,820	+		BT3753	0.86	-0.7
4,873,845	-		BT3753	0.88	+0.0
4,873,845	-		BT3753	0.88	-0.8