Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_04

Experiment: D-Fructose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Fructose 2.5 mg/ml (C)
813	-		p5482_02	0.60	-0.5
822	+		p5482_02	0.62	-2.3
910	+		p5482_02	0.80	-1.9
916	+		p5482_02	0.81	-2.2
954	+		p5482_02	0.89	-2.8
1,006	-				+0.1
1,008	+				-1.2
1,009	-				-2.5
1,009	-				-1.9
1,009	-				-0.9
1,009	-				+0.1
1,030	+				-0.9
1,030	+				+0.1
1,030	+				-2.2
1,033	+				-2.6
1,034	-				-0.3
1,034	-				-0.7
1,055	-				-0.9
1,078	+				-0.7
1,087	+				-0.6
1,088	-				-1.5
1,088	-				-0.7
1,088	-				-3.1
1,091	-				-0.6
1,112	+				-0.4
1,113	-				+0.6
1,113	-				-0.4
1,116	+				-0.7
1,117	-		p5482_03	0.10	+1.1
1,155	+		p5482_03	0.20	-0.9
1,156	-		p5482_03	0.20	-1.0
1,211	+		p5482_03	0.34	+0.1
1,211	+		p5482_03	0.34	+0.1
1,280	+		p5482_03	0.52	+0.8
1,281	-		p5482_03	0.52	+0.5
1,281	-		p5482_03	0.52	-0.9
1,281	-		p5482_03	0.52	-1.9
1,281	-		p5482_03	0.52	+0.1
1,284	+		p5482_03	0.53	-0.8
1,285	-		p5482_03	0.53	-1.2
1,288	-		p5482_03	0.54	-1.1
1,288	-		p5482_03	0.54	-2.3
1,289	+		p5482_03	0.54	+0.6
1,290	-		p5482_03	0.54	-0.9
1,354	+		p5482_03	0.70	-1.3
1,355	-		p5482_03	0.71	-1.1
1,399	-		p5482_03	0.82	+1.1
1,399	-		p5482_03	0.82	+0.6
1,399	-		p5482_03	0.82	-1.9
1,400	+		p5482_03	0.82	-0.7
1,400	+		p5482_03	0.82	-0.7
1,401	-		p5482_03	0.82	-0.9
1,401	-		p5482_03	0.82	-0.9
1,401	-		p5482_03	0.82	-0.1
1,401	-		p5482_03	0.82	-1.5
1,401	-		p5482_03	0.82	-1.1
1,429	+		p5482_03	0.90	-0.9
1,430	-				+0.1
1,430	-				-1.9
1,430	-				-0.3
1,457	-				-0.5
1,475	+				-0.7
1,476	-				-1.7
1,476	-				-1.0
1,476	-				+0.1
1,477	+				+0.1
1,477	+				-0.9
1,478	-				-0.8
1,478	-				+0.8
1,478	-				-0.9
1,478	-				-0.6
1,499	+				-0.8
1,558	-				-1.4
1,570	-				-1.4
1,645	-				+0.1
1,656	-				+0.1
1,656	-				-0.5
1,698	-				+0.1
1,752	-				-0.4
1,784	+				-2.0
1,785	-				+0.1
1,785	-				-1.5
1,824	+				-1.2
1,825	-				-0.1
1,833	+				-1.5
1,872	-		p5482_04	0.13	+0.1
1,880	+		p5482_04	0.14	+0.1
1,881	-		p5482_04	0.14	-0.9
1,881	-		p5482_04	0.14	-0.9
1,881	-		p5482_04	0.14	+1.1
1,985	+		p5482_04	0.29	-0.9
2,024	-		p5482_04	0.35	-0.9
2,084	+		p5482_04	0.44	-0.7
2,174	+		p5482_04	0.57	-0.5
2,175	-		p5482_04	0.57	-0.6
2,181	+		p5482_04	0.58	-1.9
2,181	+		p5482_04	0.58	-0.3
2,181	+		p5482_04	0.58	-0.5
2,181	+		p5482_04	0.58	-1.9
2,184	-		p5482_04	0.58	-1.2
2,184	-		p5482_04	0.58	+3.1
2,225	-		p5482_04	0.64	-1.3
2,225	-		p5482_04	0.64	-0.6
2,225	-		p5482_04	0.64	-0.4
2,225	-		p5482_04	0.64	+1.6
2,255	+		p5482_04	0.68	-0.6
2,256	-		p5482_04	0.69	-1.0
2,260	-		p5482_04	0.69	-0.9
2,260	-		p5482_04	0.69	-0.7
2,382	+		p5482_04	0.87	+0.1
2,382	+		p5482_04	0.87	-0.9
2,383	-		p5482_04	0.87	+0.1
2,383	-		p5482_04	0.87	-0.8
2,402	+		p5482_04	0.90	+0.1
2,469	+				-1.3
2,469	+				-0.5
2,470	-				-1.5
2,470	-				+0.1
2,470	-				-0.4
2,470	-				-1.5
2,470	-				+0.1
2,532	+				-0.9
2,557	+				-0.8
2,558	-				-1.3
2,558	-				-0.6
2,558	-				+0.1
2,558	-				-0.2
2,616	+				+0.4
2,616	+				-1.1
2,616	+				+0.1
2,616	+				-0.7
2,617	-				+0.1
2,617	-				-0.6
2,617	-				-1.5
2,617	-				-1.3
2,617	-				-1.2
2,617	-				-0.1
2,618	+				+0.1
2,639	+				-0.9
2,639	+				-1.7
2,639	+				-1.7
2,640	-				+0.1
2,642	+				-0.8
2,642	+				-1.0
2,643	-				-0.6
2,643	-				+0.1
2,680	+				-0.0
2,681	-				-0.4
2,729	-				-1.3
2,729	-				-0.5
2,729	-				-0.7
2,729	-				-0.7
2,731	-				-1.9
2,749	-				-0.8