Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2225

Experiment: Levan - from Erwinia herbicola; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Levan - from Erwinia herbicola; autoclaved 2.5 mg/ml (C)
2,793,197	-				+2.0
2,793,260	+				-0.6
2,793,261	-				-1.3
2,793,313	-				-0.6
2,793,318	+				-1.1
2,793,319	-				-1.3
2,793,408	+				+1.0
2,793,409	-				-2.2
2,793,545	-		BT2224	0.15	-1.2
2,793,545	-		BT2224	0.15	-2.3
2,793,545	-		BT2224	0.15	-0.0
2,793,551	-		BT2224	0.16	-1.1
2,793,573	+		BT2224	0.19	-0.6
2,793,584	+		BT2224	0.21	+2.6
2,793,625	+		BT2224	0.26	-1.2
2,793,625	+		BT2224	0.26	-1.5
2,793,702	+		BT2224	0.37	-0.8
2,793,705	-		BT2224	0.37	-0.0
2,793,748	+		BT2224	0.43	-1.0
2,793,749	-		BT2224	0.44	-0.9
2,793,810	-		BT2224	0.52	-0.3
2,793,896	+		BT2224	0.64	-0.2
2,793,896	+		BT2224	0.64	-1.0
2,793,897	-		BT2224	0.64	-1.6
2,793,897	-		BT2224	0.64	-0.0
2,793,897	-		BT2224	0.64	-2.3
2,793,990	-		BT2224	0.77	-2.6
2,793,990	-		BT2224	0.77	+1.3
2,794,071	-		BT2224	0.88	-0.6
2,794,077	+		BT2224	0.89	+2.3
2,794,139	-				-1.9
2,794,156	+				-0.8
2,794,161	+				-2.0
2,794,181	-				-0.2
2,794,181	-				-1.6
2,794,181	-				-0.7
2,794,184	+				-1.0
2,794,184	+				+0.6
2,794,185	-				-0.9
2,794,218	+				-1.4
2,794,281	+		BT2225	0.19	-1.3
2,794,282	-		BT2225	0.19	-0.0
2,794,282	-		BT2225	0.19	+1.0
2,794,391	-		BT2225	0.37	-2.8
2,794,428	+		BT2225	0.43	-1.0
2,794,430	+		BT2225	0.43	-2.6
2,794,431	-		BT2225	0.43	-1.3
2,794,452	+		BT2225	0.47	-0.0
2,794,484	-		BT2225	0.52	-2.5
2,794,540	+		BT2225	0.61	-1.1
2,794,560	+		BT2225	0.65	-1.6
2,794,561	-		BT2225	0.65	-1.8
2,794,562	+		BT2225	0.65	-1.9
2,794,562	+		BT2225	0.65	-0.0
2,794,585	+		BT2225	0.69	-1.0
2,794,635	+		BT2225	0.77	-1.0
2,794,677	+		BT2225	0.84	-2.0
2,794,677	+		BT2225	0.84	-0.0
2,794,677	+		BT2225	0.84	-1.6
2,794,677	+		BT2225	0.84	-1.8
2,794,678	-		BT2225	0.84	-0.3
2,794,679	+		BT2225	0.84	-3.0
2,794,680	-		BT2225	0.84	-2.0
2,794,763	+				-1.9
2,794,786	-				-1.0
2,794,807	-				-1.0
2,794,880	+				+0.4
2,794,885	-				-0.6
2,794,906	+				-0.0
2,795,014	+				-0.5
2,795,019	+				-1.6
2,795,030	+				-1.1
2,795,096	+				-0.6
2,795,178	+		BT2226	0.11	-0.8
2,795,179	-		BT2226	0.11	-0.0
2,795,179	-		BT2226	0.11	-2.0
2,795,183	-		BT2226	0.12	-1.3
2,795,183	-		BT2226	0.12	-1.5
2,795,183	-		BT2226	0.12	-1.3
2,795,196	+		BT2226	0.13	-1.7
2,795,225	+		BT2226	0.17	+1.0
2,795,225	+		BT2226	0.17	-0.0
2,795,226	-		BT2226	0.17	-1.0
2,795,226	-		BT2226	0.17	-0.7
2,795,236	+		BT2226	0.18	+1.0
2,795,237	-		BT2226	0.18	-0.0
2,795,237	-		BT2226	0.18	-1.6
2,795,256	+		BT2226	0.21	+1.3
2,795,349	-		BT2226	0.32	-2.0
2,795,366	-		BT2226	0.34	-1.5
2,795,369	+		BT2226	0.34	-0.0
2,795,401	+		BT2226	0.38	-0.3
2,795,405	-		BT2226	0.38	-1.0
2,795,426	-		BT2226	0.41	-1.9
2,795,434	+		BT2226	0.42	-1.2
2,795,434	+		BT2226	0.42	+0.6
2,795,435	-		BT2226	0.42	-1.0
2,795,439	+		BT2226	0.42	-0.0
2,795,440	-		BT2226	0.42	-1.0
2,795,440	-		BT2226	0.42	-1.3
2,795,458	+		BT2226	0.44	-0.0
2,795,459	-		BT2226	0.45	-0.7
2,795,530	+		BT2226	0.53	-1.5
2,795,574	+		BT2226	0.58	-1.6
2,795,574	+		BT2226	0.58	-1.8
2,795,576	+		BT2226	0.58	+0.7
2,795,577	-		BT2226	0.59	-0.5
2,795,577	-		BT2226	0.59	-1.2
2,795,578	+		BT2226	0.59	-0.6
2,795,579	-		BT2226	0.59	-0.6
2,795,673	+		BT2226	0.70	-0.8
2,795,689	+		BT2226	0.72	-0.0
2,795,706	+		BT2226	0.74	-0.9
2,795,707	-		BT2226	0.74	-1.0
2,795,707	-		BT2226	0.74	-1.4
2,795,707	-		BT2226	0.74	-2.0
2,795,754	+		BT2226	0.79	-1.6
2,795,754	+		BT2226	0.79	-2.8