Experiment: Levan - from Erwinia herbicola; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0098 and BT0099 are separated by 383 nucleotides BT0099 and BT0100 are separated by 19 nucleotides BT0100 and BT0101 overlap by 16 nucleotides
BT0098: BT0098 - conserved protein found in conjugate transposon (NCBI ptt file), at 89,859 to 90,620
BT0098
BT0099: BT0099 - hypothetical protein (NCBI ptt file), at 91,004 to 91,285
BT0099
BT0100: BT0100 - hypothetical protein (NCBI ptt file), at 91,305 to 91,742
BT0100
BT0101: BT0101 - conserved hypothetical protein (NCBI ptt file), at 91,727 to 92,965
BT0101
Position (kb) 91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 90.298 kb on + strand, within BT0098 at 90.359 kb on + strand, within BT0098 at 90.514 kb on + strand, within BT0098 at 91.597 kb on + strand, within BT0100 at 91.598 kb on - strand, within BT0100 at 91.610 kb on + strand, within BT0100 at 91.740 kb on + strand at 91.776 kb on - strand at 91.813 kb on - strand at 91.829 kb on - strand at 91.829 kb on - strand at 91.829 kb on - strand at 91.871 kb on - strand, within BT0101 at 91.931 kb on - strand, within BT0101 at 91.931 kb on - strand, within BT0101 at 91.931 kb on - strand, within BT0101 at 91.984 kb on + strand, within BT0101 at 92.006 kb on - strand, within BT0101 at 92.031 kb on - strand, within BT0101 at 92.031 kb on - strand, within BT0101 at 92.031 kb on - strand, within BT0101 at 92.071 kb on - strand, within BT0101 at 92.071 kb on - strand, within BT0101 at 92.074 kb on + strand, within BT0101 at 92.075 kb on - strand, within BT0101 at 92.263 kb on - strand, within BT0101
Per-strain Table
Position Strand Gene LocusTag Fraction Levan - from Erwinia herbicola; autoclaved 2.5 mg/ml (C) remove 90,298 + BT0098 0.58 -1.0 90,359 + BT0098 0.66 -1.4 90,514 + BT0098 0.86 -1.6 91,597 + BT0100 0.67 -2.0 91,598 - BT0100 0.67 -3.7 91,610 + BT0100 0.70 -1.2 91,740 + -1.0 91,776 - -1.6 91,813 - -2.0 91,829 - -2.6 91,829 - +0.4 91,829 - -2.4 91,871 - BT0101 0.12 -1.0 91,931 - BT0101 0.16 +0.7 91,931 - BT0101 0.16 +0.6 91,931 - BT0101 0.16 -0.9 91,984 + BT0101 0.21 -0.5 92,006 - BT0101 0.23 -2.0 92,031 - BT0101 0.25 +0.0 92,031 - BT0101 0.25 -1.0 92,031 - BT0101 0.25 +0.0 92,071 - BT0101 0.28 -1.0 92,071 - BT0101 0.28 -0.6 92,074 + BT0101 0.28 -1.3 92,075 - BT0101 0.28 -1.1 92,263 - BT0101 0.43 +0.0
Or see this region's nucleotide sequence