Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3200

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin 2.5 mg/ml (C)
4,088,372	-		BT3198	0.75	-1.0
4,088,469	-		BT3198	0.86	-2.0
4,088,528	-				-1.3
4,088,528	-				-0.6
4,088,648	-				-1.2
4,088,665	-				-1.0
4,088,796	-		BT3199	0.15	-1.1
4,088,798	-		BT3199	0.16	-1.4
4,088,809	-		BT3199	0.18	+0.5
4,088,809	-		BT3199	0.18	+0.3
4,088,878	-		BT3199	0.31	-2.2
4,088,887	-		BT3199	0.33	-0.8
4,089,289	-				-1.0
4,089,315	-				-3.5
4,089,360	-		BT3200	0.10	-0.6
4,089,427	-		BT3200	0.23	-0.0
4,089,430	-		BT3200	0.24	-1.3
4,089,689	-		BT3200	0.74	+1.0
4,089,783	-				-2.0
4,089,805	-				-0.0
4,089,816	-				-1.3
4,089,995	-				+1.3
4,090,018	-				-1.4
4,090,023	-				-1.7
4,090,025	-				+2.0
4,090,052	-				-1.4
4,090,092	-				-1.5
4,090,094	-				-0.6
4,090,108	+				-0.2
4,090,177	+				+1.0
4,090,179	+				+2.0
4,090,198	+				-1.0
4,090,209	-				-2.0
4,090,229	+				-2.0
4,090,233	+				-2.1
4,090,332	+				-1.8
4,090,334	+				-2.0
4,090,359	+		BT3201	0.10	-2.3
4,090,360	-		BT3201	0.10	-2.1
4,090,387	-		BT3201	0.11	-2.0
4,090,401	+		BT3201	0.12	-1.9
4,090,446	-		BT3201	0.13	-1.0
4,090,463	+		BT3201	0.14	-2.0
4,090,466	-		BT3201	0.14	-0.0
4,090,466	-		BT3201	0.14	-0.9
4,090,489	-		BT3201	0.14	-2.6
4,090,545	+		BT3201	0.16	-1.1
4,090,592	-		BT3201	0.18	-1.3
4,090,632	-		BT3201	0.19	-1.6
4,090,664	-		BT3201	0.20	-2.2
4,090,667	+		BT3201	0.20	-1.9
4,090,668	-		BT3201	0.20	+0.4
4,090,668	-		BT3201	0.20	-2.3
4,090,712	+		BT3201	0.22	-1.8
4,090,741	-		BT3201	0.22	-0.0
4,090,771	-		BT3201	0.23	-1.8
4,090,775	+		BT3201	0.24	-1.3
4,090,775	+		BT3201	0.24	-0.9
4,090,775	+		BT3201	0.24	-0.0
4,090,776	-		BT3201	0.24	-1.6
4,090,776	-		BT3201	0.24	+0.1
4,090,776	-		BT3201	0.24	-0.0
4,090,815	-		BT3201	0.25	-1.0