Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3880

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin 2.5 mg/ml (C)
5,051,984	-				-0.0
5,051,984	-				-0.9
5,052,012	-				-0.9
5,052,012	-				-0.0
5,052,014	-				-1.3
5,052,025	-		BT3879	0.11	-0.0
5,052,063	+		BT3879	0.22	-0.8
5,052,173	+		BT3879	0.54	-1.9
5,052,271	+		BT3879	0.81	-2.3
5,052,272	-		BT3879	0.82	-1.0
5,052,272	-		BT3879	0.82	-1.6
5,052,290	+		BT3879	0.87	-1.6
5,052,311	+				+0.6
5,052,337	+				+0.4
5,052,338	-				-1.4
5,052,431	+				-2.0
5,052,434	+				-0.5
5,052,435	-				-0.8
5,052,476	-				-1.4
5,052,476	-				-0.0
5,052,513	-		BT3880	0.12	-0.6
5,052,564	+		BT3880	0.21	-1.3
5,052,640	-		BT3880	0.34	-2.8
5,052,640	-		BT3880	0.34	-2.3
5,052,739	+		BT3880	0.51	-3.5
5,052,740	-		BT3880	0.51	-2.4
5,052,803	+		BT3880	0.62	-2.3
5,052,804	-				-1.0
5,052,825	+		BT3880	0.65	-3.5
5,052,852	-		BT3880	0.70	-1.6
5,052,893	+		BT3880	0.77	-1.0
5,052,893	+		BT3880	0.77	-2.3
5,052,894	-		BT3880	0.77	-1.5
5,052,894	-		BT3880	0.77	-2.1
5,052,969	+				-0.0
5,053,016	-				-0.8
5,053,016	-				-1.6
5,053,016	-				-1.2
5,053,030	-				-1.2
5,053,059	+				-1.1
5,053,123	+		BT3881	0.15	-1.0
5,053,124	-		BT3881	0.15	-0.6
5,053,124	-				-0.7
5,053,175	-		BT3881	0.19	-1.0
5,053,231	+		BT3881	0.24	-0.8
5,053,232	-		BT3881	0.24	-2.0
5,053,234	-		BT3881	0.24	-0.7
5,053,262	+		BT3881	0.26	-1.2
5,053,413	+		BT3881	0.39	-2.3
5,053,416	-		BT3881	0.40	-0.0
5,053,416	-		BT3881	0.40	-1.0
5,053,497	-		BT3881	0.46	-0.6
5,053,524	+		BT3881	0.49	-2.8
5,053,524	+		BT3881	0.49	-1.4
5,053,538	-		BT3881	0.50	-2.8
5,053,549	+		BT3881	0.51	-1.0
5,053,567	+		BT3881	0.52	-0.4
5,053,567	+		BT3881	0.52	-1.0
5,053,593	+		BT3881	0.55	-2.6
5,053,594	-		BT3881	0.55	-0.5
5,053,683	-		BT3881	0.62	-0.9
5,053,698	+		BT3881	0.64	+0.4
5,053,836	+		BT3881	0.75	-2.5
5,053,840	+		BT3881	0.76	-0.0
5,053,846	+		BT3881	0.76	-0.5
5,053,847	-		BT3881	0.76	-2.7
5,053,847	-		BT3881	0.76	-1.0
5,053,875	+		BT3881	0.79	-1.0
5,053,879	-		BT3881	0.79	+0.2