Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3701

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin 2.5 mg/ml (C)
4,804,867	-	SusE	BT3700	0.28	-2.7
4,804,926	+	SusE	BT3700	0.33	-1.1
4,805,021	-	SusE	BT3700	0.41	-1.1
4,805,023	-	SusE	BT3700	0.41	-2.4
4,805,082	+	SusE	BT3700	0.46	-1.8
4,805,127	-	SusE	BT3700	0.50	-2.4
4,805,127	-	SusE	BT3700	0.50	-3.4
4,805,150	-	SusE	BT3700	0.52	-0.4
4,805,150	-	SusE	BT3700	0.52	-0.1
4,805,150	-	SusE	BT3700	0.52	-1.9
4,805,156	+	SusE	BT3700	0.53	-1.8
4,805,287	-	SusE	BT3700	0.64	-1.1
4,805,287	-	SusE	BT3700	0.64	-4.3
4,805,288	+	SusE	BT3700	0.64	-1.7
4,805,288	+	SusE	BT3700	0.64	-3.1
4,805,289	-	SusE	BT3700	0.64	-2.7
4,805,419	+	SusE	BT3700	0.75	-1.1
4,805,420	-	SusE	BT3700	0.75	-2.9
4,805,421	+	SusE	BT3700	0.75	-2.4
4,805,422	-	SusE	BT3700	0.75	-0.1
4,805,422	-	SusE	BT3700	0.75	-3.3
4,805,491	+	SusE	BT3700	0.81	+0.9
4,805,492	-	SusE	BT3700	0.81	-3.1
4,805,492	-	SusE	BT3700	0.81	-2.1
4,805,535	-	SusE	BT3700	0.85	-1.7
4,805,561	+	SusE	BT3700	0.87	-1.9
4,805,562	-	SusE	BT3700	0.87	-1.1
4,805,562	-	SusE	BT3700	0.87	-3.5
4,805,577	+	SusE	BT3700	0.89	-0.8
4,805,602	+				-2.1
4,805,657	+				-3.3
4,805,688	-				-2.7
4,805,721	+				-0.8
4,805,724	-				-3.5
4,805,725	+				-5.5
4,805,748	-				+0.9
4,805,768	+				-2.4
4,805,768	+				-1.7
4,805,815	+				-1.7
4,805,869	+				-5.6
4,805,874	-				-4.2
4,805,888	+				-3.3
4,805,929	+	SusD	BT3701	0.11	-1.5
4,806,073	+	SusD	BT3701	0.20	-4.6
4,806,074	-	SusD	BT3701	0.20	-4.4
4,806,119	+	SusD	BT3701	0.23	-1.7
4,806,231	+	SusD	BT3701	0.30	-1.1
4,806,242	-	SusD	BT3701	0.30	-1.1
4,806,243	+	SusD	BT3701	0.30	-2.4
4,806,244	-	SusD	BT3701	0.30	-3.3
4,806,336	+	SusD	BT3701	0.36	-2.1
4,806,483	-	SusD	BT3701	0.45	-2.9
4,806,496	+	SusD	BT3701	0.46	-4.8
4,806,511	+	SusD	BT3701	0.46	-6.5
4,806,512	-	SusD	BT3701	0.46	-3.9
4,806,515	+	SusD	BT3701	0.47	-5.3
4,806,515	+	SusD	BT3701	0.47	-2.9
4,806,516	-	SusD	BT3701	0.47	-1.1
4,806,619	-	SusD	BT3701	0.53	-3.1
4,806,619	-	SusD	BT3701	0.53	-1.7
4,806,623	+	SusD	BT3701	0.53	-2.4
4,806,623	+	SusD	BT3701	0.53	-3.8
4,806,652	+	SusD	BT3701	0.55	-6.6
4,806,688	+	SusD	BT3701	0.57	-4.9
4,806,688	+	SusD	BT3701	0.57	-5.0
4,806,775	+	SusD	BT3701	0.62	-4.6
4,806,775	+	SusD	BT3701	0.62	-1.1
4,806,775	+	SusD	BT3701	0.62	-4.4
4,806,776	-	SusD	BT3701	0.62	-2.4
4,806,776	-	SusD	BT3701	0.62	-3.8
4,806,776	-	SusD	BT3701	0.62	-0.1
4,806,776	-	SusD	BT3701	0.62	-5.4
4,806,779	+	SusD	BT3701	0.63	-0.1
4,806,780	-	SusD	BT3701	0.63	-3.9
4,806,814	+	SusD	BT3701	0.65	-0.1
4,806,815	-	SusD	BT3701	0.65	-2.7
4,806,815	-	SusD	BT3701	0.65	-1.1
4,806,819	-	SusD	BT3701	0.65	-2.1
4,806,821	-	SusD	BT3701	0.65	-3.1
4,806,910	+	SusD	BT3701	0.71	-3.9
4,806,998	+	SusD	BT3701	0.76	-2.1
4,806,999	-	SusD	BT3701	0.76	-0.1
4,807,001	-	SusD	BT3701	0.76	-0.1
4,807,077	-	SusD	BT3701	0.81	-2.7
4,807,077	-	SusD	BT3701	0.81	-4.3
4,807,322	+				-2.1
4,807,383	-				-3.5
4,807,411	-				-3.8
4,807,435	-				-1.7
4,807,441	-				-0.1
4,807,465	+				-2.1
4,807,492	-				-1.7
4,807,544	+				-0.9
4,807,545	-				-4.0
4,807,551	+				-5.6
4,807,633	-				-6.0
4,807,633	-				-3.5
4,807,651	-				-5.0
4,807,721	+	SusC	BT3702	0.10	-3.5
4,807,721	+	SusC	BT3702	0.10	-1.1
4,807,722	-	SusC	BT3702	0.10	-1.7
4,807,724	-	SusC	BT3702	0.10	-3.9
4,807,793	-	SusC	BT3702	0.12	-1.1
4,807,838	+	SusC	BT3702	0.14	+0.5
4,807,840	+	SusC	BT3702	0.14	-1.1
4,807,840	+	SusC	BT3702	0.14	-0.1
4,807,891	+	SusC	BT3702	0.16	-0.1
4,807,895	+	SusC	BT3702	0.16	-0.1
4,807,898	-	SusC	BT3702	0.16	-1.7
4,807,898	-	SusC	BT3702	0.16	-3.1
4,808,031	+	SusC	BT3702	0.20	-1.1
4,808,031	+	SusC	BT3702	0.20	-4.5
4,808,074	-	SusC	BT3702	0.22	-1.7
4,808,074	-	SusC	BT3702	0.22	-0.1
4,808,132	+	SusC	BT3702	0.24	-3.3
4,808,133	-	SusC	BT3702	0.24	-0.1
4,808,138	+	SusC	BT3702	0.24	-1.1
4,808,206	+	SusC	BT3702	0.26	-4.8
4,808,270	+	SusC	BT3702	0.28	-1.7