Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2881

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin 2.5 mg/ml (C)
3,600,238	+				-2.5
3,600,238	+				-1.1
3,600,239	-				-2.1
3,600,239	-				+1.5
3,600,310	+		BT2880	0.10	-0.1
3,600,310	+		BT2880	0.10	-0.3
3,600,326	+		BT2880	0.12	-0.3
3,600,327	-		BT2880	0.12	-0.1
3,600,327	-		BT2880	0.12	-2.6
3,600,331	+		BT2880	0.12	-0.1
3,600,418	+		BT2880	0.21	-1.7
3,600,444	-		BT2880	0.23	+0.1
3,600,444	-		BT2880	0.23	-2.4
3,600,445	+		BT2880	0.23	-1.3
3,600,446	-		BT2880	0.23	-1.4
3,600,446	-		BT2880	0.23	-1.8
3,600,448	+		BT2880	0.24	-0.1
3,600,449	-		BT2880	0.24	+0.6
3,600,449	-		BT2880	0.24	-1.7
3,600,450	+		BT2880	0.24	-1.1
3,600,450	+		BT2880	0.24	-3.4
3,600,451	-		BT2880	0.24	-3.0
3,600,484	-		BT2880	0.27	+0.1
3,600,484	-		BT2880	0.27	-1.3
3,600,513	+		BT2880	0.30	+0.6
3,600,572	+		BT2880	0.36	-0.1
3,600,630	+		BT2880	0.41	-1.1
3,600,650	+		BT2880	0.43	-1.1
3,600,652	+		BT2880	0.43	+0.8
3,600,652	+		BT2880	0.43	-0.5
3,600,653	-		BT2880	0.43	-1.8
3,600,799	-		BT2880	0.58	+0.9
3,600,799	-		BT2880	0.58	-1.0
3,600,819	+		BT2880	0.60	-0.8
3,600,821	+		BT2880	0.60	-1.1
3,600,833	+		BT2880	0.61	-2.1
3,600,852	+		BT2880	0.63	-1.6
3,600,879	-		BT2880	0.65	+0.7
3,600,880	+		BT2880	0.65	-0.1
3,600,950	-		BT2880	0.72	-0.9
3,600,950	-		BT2880	0.72	-1.4
3,600,950	-		BT2880	0.72	-0.1
3,600,950	-		BT2880	0.72	-3.0
3,600,967	+		BT2880	0.74	-1.1
3,601,002	-		BT2880	0.77	-1.7
3,601,002	-		BT2880	0.77	+1.5
3,601,002	-		BT2880	0.77	-2.7
3,601,077	+		BT2880	0.84	-1.7
3,601,078	-		BT2880	0.85	+0.9
3,601,078	-		BT2880	0.85	+0.2
3,601,079	+		BT2880	0.85	-1.7
3,601,080	-		BT2880	0.85	-2.0
3,601,114	+		BT2880	0.88	-1.7
3,601,168	+				-1.1
3,601,224	+				-1.4
3,601,225	-				-2.9
3,601,225	-				-2.5
3,601,227	+				-3.9
3,601,227	+				-1.7
3,601,228	-				-2.5
3,601,427	-		BT2881	0.27	+0.2
3,601,488	+		BT2881	0.35	-0.3
3,601,489	-		BT2881	0.36	-0.4
3,601,489	-		BT2881	0.36	-1.7
3,601,565	+		BT2881	0.46	-1.1
3,601,594	+		BT2881	0.50	-0.7
3,601,594	+		BT2881	0.50	-1.1
3,601,595	-		BT2881	0.50	-0.1
3,601,600	-		BT2881	0.51	-2.1
3,601,680	-		BT2881	0.62	-1.6
3,601,680	-		BT2881	0.62	-0.1
3,601,680	-		BT2881	0.62	+0.7
3,601,681	+		BT2881	0.62	-1.2
3,601,693	-		BT2881	0.64	+1.9
3,601,711	+		BT2881	0.67	-0.6
3,601,711	+		BT2881	0.67	-1.7
3,601,726	+		BT2881	0.69	-2.1
3,601,744	+		BT2881	0.71	-1.1
3,601,745	-		BT2881	0.71	-0.4
3,601,749	+		BT2881	0.72	+1.9
3,601,752	-		BT2881	0.72	+1.5
3,601,763	+		BT2881	0.74	-1.1
3,601,817	-		BT2881	0.81	+0.6
3,601,841	-		BT2881	0.85	-1.7
3,601,841	-		BT2881	0.85	-1.1
3,601,869	+		BT2881	0.89	-2.7
3,601,869	+		BT2881	0.89	-0.1
3,601,897	-				-0.4
3,601,897	-				+0.2
3,601,897	-				-3.0
3,601,933	-				-2.1
3,601,942	+				-1.1
3,601,942	+				-1.9
3,601,942	+				-0.6
3,601,945	-				-1.1
3,601,982	+				-2.5
3,601,983	-				-1.7
3,601,983	-				-0.1
3,602,114	-		BT2882	0.13	-1.1
3,602,134	-		BT2882	0.15	+2.2
3,602,139	+		BT2882	0.16	-2.1
3,602,140	-		BT2882	0.16	-1.7
3,602,232	-		BT2882	0.25	-1.1
3,602,236	-		BT2882	0.26	-2.1
3,602,236	-		BT2882	0.26	-0.5
3,602,309	-		BT2882	0.33	-1.0
3,602,315	+		BT2882	0.34	-1.7
3,602,316	-		BT2882	0.34	-1.1
3,602,369	+		BT2882	0.39	-0.1
3,602,387	-		BT2882	0.41	-2.1
3,602,389	-		BT2882	0.41	-2.4
3,602,390	+		BT2882	0.41	-1.6
3,602,391	-		BT2882	0.42	-1.2
3,602,391	-		BT2882	0.42	-0.8
3,602,392	+		BT2882	0.42	-2.1
3,602,392	+		BT2882	0.42	-0.1
3,602,393	-		BT2882	0.42	+0.9
3,602,409	-		BT2882	0.43	-0.5
3,602,450	-		BT2882	0.48	-0.7
3,602,560	+		BT2882	0.59	-1.7
3,602,632	+		BT2882	0.66	-1.1
3,602,633	-		BT2882	0.66	-0.1
3,602,677	+		BT2882	0.71	-0.1
3,602,679	+		BT2882	0.71	-1.7
3,602,679	+		BT2882	0.71	-1.4
3,602,681	+		BT2882	0.71	-0.7
3,602,681	+		BT2882	0.71	-0.1
3,602,681	+		BT2882	0.71	+0.9
3,602,681	+		BT2882	0.71	-1.5
3,602,802	+		BT2882	0.84	-1.6
3,602,838	-		BT2882	0.88	-2.9
3,602,838	-		BT2882	0.88	-1.0
3,602,866	+				-0.4
3,602,866	+				-4.3
3,602,867	-				-0.1
3,602,899	+				+0.5
3,602,899	+				-2.2
3,602,900	-				-2.4
3,602,904	-				-1.6
3,602,916	+				-1.7
3,602,918	+				-1.9
3,602,934	+				-1.1
3,602,934	+				-0.1
3,602,938	-				+0.1