Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2860

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin 2.5 mg/ml (C)
3,573,625	-		BT2859	0.77	-1.9
3,573,633	+		BT2859	0.77	-1.3
3,573,649	-		BT2859	0.78	-2.4
3,573,673	-		BT2859	0.79	-2.0
3,573,698	+		BT2859	0.79	-0.8
3,573,699	-		BT2859	0.79	-0.6
3,573,715	-		BT2859	0.80	-2.7
3,573,777	+		BT2859	0.82	-2.4
3,573,778	-		BT2859	0.82	-2.7
3,573,861	+		BT2859	0.85	-1.7
3,573,882	+		BT2859	0.85	-0.1
3,573,883	-		BT2859	0.85	-2.1
3,573,909	+		BT2859	0.86	-0.1
3,573,909	+		BT2859	0.86	-2.1
3,573,909	+		BT2859	0.86	-1.1
3,573,909	+		BT2859	0.86	-1.2
3,573,909	+		BT2859	0.86	+1.5
3,573,910	-		BT2859	0.86	-1.4
3,573,910	-		BT2859	0.86	-2.4
3,573,991	-		BT2859	0.89	-2.4
3,573,991	-		BT2859	0.89	-1.4
3,574,045	-				-0.1
3,574,045	-				-0.1
3,574,075	-				-1.4
3,574,075	-				-2.4
3,574,075	-				-1.7
3,574,098	-				-0.1
3,574,098	-				-1.2
3,574,098	-				-0.1
3,574,104	+				-1.1
3,574,104	+				-1.7
3,574,105	-				-2.1
3,574,105	-				-1.4
3,574,107	+				-2.1
3,574,108	-				-2.0
3,574,118	+				-2.1
3,574,183	-				-0.5
3,574,185	+				+0.2
3,574,210	+				-1.6
3,574,304	-				-1.5
3,574,323	+				-2.1
3,574,324	-				+0.1
3,574,343	+				-1.8
3,574,378	+				-0.3
3,574,384	+				-0.9
3,574,448	+				-1.7
3,574,448	+				-0.1
3,574,448	+				-0.9
3,574,449	-				-1.7
3,574,449	-				-1.7
3,574,452	+				-1.5
3,574,452	+				+0.5
3,574,452	+				-0.1
3,574,456	+				-0.2
3,574,456	+				-1.1
3,574,509	+				+1.5
3,574,562	+				-1.8
3,574,562	+				-0.7
3,574,594	-				-2.7
3,574,695	+				-0.1
3,574,701	-				-2.4
3,574,728	-				-2.4
3,574,864	+				-2.1
3,574,878	-				-2.7
3,574,881	+				-1.1
3,574,881	+				-3.8
3,575,006	+		BT2860	0.11	-1.7
3,575,009	-		BT2860	0.11	-1.7
3,575,020	-		BT2860	0.11	-1.7
3,575,020	-		BT2860	0.11	-2.9
3,575,061	+		BT2860	0.12	-1.7
3,575,062	-		BT2860	0.12	-1.1
3,575,066	-		BT2860	0.12	-1.1
3,575,166	+		BT2860	0.15	-1.4
3,575,174	+		BT2860	0.15	-2.5
3,575,316	-		BT2860	0.18	-1.7
3,575,450	+		BT2860	0.22	-0.3
3,575,486	+		BT2860	0.23	-2.9
3,575,486	+		BT2860	0.23	-2.9
3,575,511	+		BT2860	0.23	-2.7
3,575,560	-		BT2860	0.24	+1.5
3,575,646	-		BT2860	0.27	-2.2
3,575,646	-		BT2860	0.27	-1.8
3,575,765	+		BT2860	0.30	-0.1
3,575,775	-		BT2860	0.30	-1.5
3,575,841	-		BT2860	0.31	-2.1
3,575,841	-		BT2860	0.31	+0.9
3,575,843	+		BT2860	0.32	-2.1
3,575,844	-		BT2860	0.32	-1.1
3,575,844	-		BT2860	0.32	-1.7
3,575,844	-		BT2860	0.32	-2.2
3,575,882	+		BT2860	0.32	-0.1
3,575,925	+		BT2860	0.34	-0.4
3,576,075	-		BT2860	0.37	-2.7
3,576,121	+		BT2860	0.38	-0.1
3,576,121	+		BT2860	0.38	+0.2
3,576,141	+		BT2860	0.39	-2.1
3,576,243	+		BT2860	0.41	-3.5
3,576,244	-		BT2860	0.42	+0.4
3,576,244	-		BT2860	0.42	-2.1
3,576,247	+		BT2860	0.42	-1.9
3,576,247	+		BT2860	0.42	-1.9
3,576,248	-				-0.1
3,576,279	+		BT2860	0.42	-1.2
3,576,350	+		BT2860	0.44	-0.1
3,576,350	+		BT2860	0.44	-3.5
3,576,350	+		BT2860	0.44	-3.5
3,576,351	-		BT2860	0.44	-2.4
3,576,352	+		BT2860	0.44	-2.7
3,576,353	-		BT2860	0.44	-3.2
3,576,383	+		BT2860	0.45	-2.2
3,576,383	+		BT2860	0.45	-0.1
3,576,383	+		BT2860	0.45	-1.7
3,576,384	-		BT2860	0.45	-1.1
3,576,384	-		BT2860	0.45	+0.5
3,576,396	-		BT2860	0.45	-0.1
3,576,440	-		BT2860	0.46	-1.4
3,576,440	-		BT2860	0.46	+0.0
3,576,440	-		BT2860	0.46	-0.1
3,576,443	-		BT2860	0.46	-2.4
3,576,462	-		BT2860	0.47	-1.7
3,576,467	-		BT2860	0.47	-2.0
3,576,492	-		BT2860	0.48	-0.7
3,576,509	-		BT2860	0.48	-1.1
3,576,517	-		BT2860	0.48	-2.4
3,576,521	+		BT2860	0.48	-1.7
3,576,567	-		BT2860	0.50	-0.1
3,576,567	-		BT2860	0.50	-0.1
3,576,587	+		BT2860	0.50	-1.2
3,576,589	+		BT2860	0.50	-1.3
3,576,591	+		BT2860	0.50	-2.1
3,576,592	-		BT2860	0.50	-4.4
3,576,594	-		BT2860	0.50	-1.1
3,576,610	+		BT2860	0.51	-1.1
3,576,610	+		BT2860	0.51	-0.5
3,576,610	+		BT2860	0.51	-1.1
3,576,611	-		BT2860	0.51	-0.7
3,576,611	-		BT2860	0.51	-1.1
3,576,769	-		BT2860	0.55	-2.1
3,576,769	-		BT2860	0.55	+0.9
3,576,769	-		BT2860	0.55	-0.5
3,576,771	-		BT2860	0.55	-2.0
3,576,854	-		BT2860	0.57	-4.7
3,576,883	-		BT2860	0.57	-1.8
3,576,889	+		BT2860	0.58	-1.0
3,576,919	+		BT2860	0.58	-1.8
3,576,966	-		BT2860	0.59	+0.3
3,577,169	+		BT2860	0.65	-1.1
3,577,192	+		BT2860	0.65	-2.1
3,577,236	+		BT2860	0.66	-3.2
3,577,251	+		BT2860	0.67	-1.9
3,577,251	+		BT2860	0.67	-0.1
3,577,252	-		BT2860	0.67	-1.6
3,577,286	+		BT2860	0.67	-2.7
3,577,287	-		BT2860	0.67	-1.2
3,577,288	+		BT2860	0.68	+0.9
3,577,288	+		BT2860	0.68	-0.1
3,577,303	+		BT2860	0.68	-2.7
3,577,351	+		BT2860	0.69	-2.9
3,577,354	-		BT2860	0.69	-0.1
3,577,374	+		BT2860	0.70	-2.4
3,577,416	+		BT2860	0.71	-1.1
3,577,484	+		BT2860	0.72	+0.0
3,577,563	-		BT2860	0.74	-0.2
3,577,588	-		BT2860	0.75	-1.7
3,577,591	+		BT2860	0.75	-0.1
3,577,654	+		BT2860	0.77	-1.7
3,577,654	+		BT2860	0.77	+0.4
3,577,664	+		BT2860	0.77	-0.1
3,577,778	+		BT2860	0.80	+1.9
3,577,779	-		BT2860	0.80	-0.1
3,577,780	-		BT2860	0.80	-2.4
3,577,790	+		BT2860	0.80	-0.1
3,577,796	-		BT2860	0.80	-1.2
3,577,802	+		BT2860	0.80	-2.1
3,577,802	+		BT2860	0.80	+0.5
3,577,803	-		BT2860	0.80	-2.8
3,577,818	+		BT2860	0.81	+0.1
3,577,825	-		BT2860	0.81	-2.4
3,577,888	-		BT2860	0.82	+1.5
3,577,919	+		BT2860	0.83	-2.4
3,577,920	-		BT2860	0.83	-2.4
3,577,922	+		BT2860	0.83	-1.9
3,577,991	+		BT2860	0.85	-0.3
3,577,991	+		BT2860	0.85	-1.9
3,577,993	+		BT2860	0.85	-2.0
3,578,054	+		BT2860	0.87	-1.9
3,578,075	+		BT2860	0.87	-2.1
3,578,087	+		BT2860	0.87	-1.4
3,578,134	-		BT2860	0.89	-1.7
3,578,154	-		BT2860	0.89	-2.9
3,578,154	-		BT2860	0.89	-2.7
3,578,160	+		BT2860	0.89	+0.9
3,578,161	-		BT2860	0.89	-4.8
3,578,162	+		BT2860	0.89	-0.7
3,578,162	+		BT2860	0.89	-0.1
3,578,162	+		BT2860	0.89	-2.4
3,578,162	+		BT2860	0.89	-1.1
3,578,162	+		BT2860	0.89	-0.1
3,578,163	-		BT2860	0.89	-1.4
3,578,166	-		BT2860	0.89	-2.1
3,578,166	-		BT2860	0.89	-1.9
3,578,175	-		BT2860	0.90	-2.7
3,578,182	-		BT2860	0.90	-1.3
3,578,247	+				+0.5
3,578,320	+				-1.7
3,578,320	+				-1.3
3,578,339	+				-0.1
3,578,339	+				-2.1
3,578,390	+				-2.1
3,578,432	+				-1.5
3,578,444	+				-0.1
3,578,496	+				-0.6
3,578,509	+				-1.0
3,578,550	+				-2.2
3,578,555	+				-2.1
3,578,568	+				-3.5
3,578,575	+				-1.5
3,578,619	+				-2.7
3,578,624	+				-0.1
3,578,625	-				-1.1
3,578,634	+				-1.1
3,578,635	-				-0.8
3,578,639	-				-1.5
3,578,653	+				-0.8
3,578,694	-				-1.7
3,578,798	+				-1.6
3,578,798	+				+0.9
3,578,805	+				-0.9
3,578,842	-				-1.7
3,578,846	-				-2.1
3,578,857	-				-3.1
3,578,871	-				-1.5
3,578,939	-				-2.0
3,578,939	-				+2.2
3,579,018	+				-0.1
3,579,215	+				-1.5
3,579,215	+				-0.6
3,579,225	+				-0.1
3,579,388	+				-1.4
3,579,389	-				-3.2
3,579,389	-				+0.1
3,579,389	-				-2.1
3,579,389	-				-1.5
3,579,451	-				-1.1
3,579,454	+				-1.3
3,579,455	-				-1.7
3,579,459	-				-0.9
3,579,472	+				-1.1
3,579,513	+				-1.7
3,579,513	+				-1.1
3,579,520	+				-0.1
3,579,520	+				-2.9
3,579,521	-				+0.3
3,579,540	+				-1.1
3,579,541	-				-1.2