Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1175

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin 2.5 mg/ml (C)
1,462,518	+		BT1173	0.67	-0.6
1,462,519	-		BT1173	0.67	-0.6
1,462,725	+		BT1173	0.88	+1.3
1,462,739	+		BT1173	0.89	-2.4
1,462,798	-				-0.1
1,462,847	+				-2.6
1,463,085	-		BT1174	0.52	-1.8
1,463,085	-		BT1174	0.52	-1.1
1,463,097	+		BT1174	0.54	-2.1
1,463,098	-		BT1174	0.55	-1.6
1,463,098	-		BT1174	0.55	-1.6
1,463,101	+		BT1174	0.55	-3.2
1,463,130	+		BT1174	0.62	-0.9
1,463,145	+		BT1174	0.65	-0.4
1,463,145	+		BT1174	0.65	-0.3
1,463,190	+		BT1174	0.75	-1.1
1,463,191	-		BT1174	0.75	-2.1
1,463,209	-		BT1174	0.80	-2.1
1,463,210	+		BT1174	0.80	-1.1
1,463,211	-		BT1174	0.80	-3.4
1,463,214	-		BT1174	0.81	+0.9
1,463,278	+				-3.4
1,463,279	-				-0.6
1,463,297	+				-1.1
1,463,381	-				+1.5
1,463,387	+				-1.8
1,463,388	-				-2.4
1,463,398	+				-3.2
1,463,451	+				-1.6
1,463,452	-				-0.1
1,463,537	-				-2.4
1,463,560	-		BT1175	0.11	-0.1
1,463,560	-		BT1175	0.11	-0.1
1,463,687	-		BT1175	0.23	-2.1
1,463,888	-		BT1175	0.40	-0.6
1,463,891	+		BT1175	0.41	-2.1
1,464,102	+		BT1175	0.60	-1.1
1,464,140	+		BT1175	0.63	-2.1
1,464,154	-		BT1175	0.64	-2.9
1,464,154	-		BT1175	0.64	-1.9
1,464,230	+		BT1175	0.71	-2.7
1,464,253	-		BT1175	0.73	-0.1
1,464,324	+		BT1175	0.79	-0.8
1,464,403	+		BT1175	0.87	-1.6
1,464,408	+		BT1175	0.87	-2.3
1,464,408	+		BT1175	0.87	-2.4
1,464,464	+				-0.1
1,464,583	-				-4.2
1,464,588	+				+0.9
1,464,596	-				+1.9
1,464,643	-				-2.1
1,464,674	-				-1.1
1,464,796	-		BT1176	0.13	-1.6
1,464,796	-		BT1176	0.13	+0.3
1,464,918	+		BT1176	0.27	-1.1
1,465,006	+		BT1176	0.37	+0.9
1,465,271	+		BT1176	0.68	-2.4
1,465,272	-		BT1176	0.68	-0.4
1,465,319	+		BT1176	0.74	-1.4
1,465,374	-		BT1176	0.80	-1.9
1,465,493	-				-2.6
1,465,542	+				-1.1