Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4480

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
5,892,917	-		BT4479	0.49	-0.8
5,892,997	-		BT4479	0.58	-0.6
5,893,028	-		BT4479	0.61	-2.4
5,893,028	-		BT4479	0.61	-2.4
5,893,161	-		BT4479	0.75	+1.4
5,893,203	+		BT4479	0.80	-2.8
5,893,203	+		BT4479	0.80	-2.4
5,893,222	+		BT4479	0.82	+1.4
5,893,379	+				-0.0
5,893,400	-				+0.4
5,893,509	+				-1.2
5,893,645	+				-2.2
5,893,650	-				-1.0
5,893,730	-				-0.6
5,893,738	-				-1.3
5,893,740	-				+0.4
5,893,740	-				-0.6
5,893,740	-				-0.6
5,893,923	+				-0.3
5,893,940	-				-1.2
5,893,945	+				-0.3
5,893,946	-				-1.6
5,893,946	-				+0.1
5,894,398	+		BT4480	0.14	-1.1
5,894,443	+		BT4480	0.16	-2.2
5,894,444	-		BT4480	0.16	+0.4
5,894,452	+		BT4480	0.16	-0.3
5,894,507	+		BT4480	0.17	-0.0
5,894,511	+		BT4480	0.17	+0.4
5,894,512	-		BT4480	0.17	-0.6
5,894,512	-		BT4480	0.17	-0.4
5,894,698	+		BT4480	0.23	-2.2
5,894,699	-		BT4480	0.23	-0.8
5,894,723	-		BT4480	0.23	+0.1
5,894,744	-		BT4480	0.24	+1.0
5,894,780	-		BT4480	0.25	-1.6
5,894,785	+		BT4480	0.25	+0.4
5,894,904	-		BT4480	0.28	+2.4
5,894,935	+		BT4480	0.29	-1.6
5,894,949	-		BT4480	0.30	-1.9
5,894,949	-		BT4480	0.30	+1.4
5,894,951	-		BT4480	0.30	-0.6
5,895,028	+		BT4480	0.32	+0.4
5,895,033	-		BT4480	0.32	-0.6
5,895,033	-		BT4480	0.32	+0.4
5,895,049	+		BT4480	0.32	-1.1
5,895,185	-		BT4480	0.36	+1.0
5,895,190	-		BT4480	0.36	-2.3
5,895,211	+		BT4480	0.37	+0.4
5,895,232	-		BT4480	0.37	-3.1
5,895,248	-		BT4480	0.38	-2.6
5,895,252	+		BT4480	0.38	-1.2
5,895,260	-		BT4480	0.38	-1.2
5,895,270	-		BT4480	0.38	+8.6
5,895,270	-		BT4480	0.38	+1.4
5,895,274	-		BT4480	0.38	-2.4
5,895,274	-		BT4480	0.38	-1.2
5,895,281	+		BT4480	0.39	-0.3
5,895,282	-		BT4480	0.39	-1.2
5,895,328	+		BT4480	0.40	-0.6
5,895,359	+		BT4480	0.41	-0.6
5,895,383	-		BT4480	0.42	+0.4
5,895,402	-		BT4480	0.42	-1.8
5,895,403	+		BT4480	0.42	-0.9
5,895,403	+		BT4480	0.42	-1.2
5,895,404	-		BT4480	0.42	+0.4
5,895,582	+		BT4480	0.47	-1.6
5,895,583	-		BT4480	0.47	-0.7
5,895,583	-		BT4480	0.47	-2.3
5,895,691	-		BT4480	0.50	+1.4
5,895,691	-		BT4480	0.50	+0.8
5,895,803	+		BT4480	0.53	+0.4
5,895,853	+		BT4480	0.54	-0.6
5,895,899	+		BT4480	0.56	-1.2
5,895,900	-		BT4480	0.56	-0.7
5,895,925	-		BT4480	0.56	-1.6
5,895,953	-		BT4480	0.57	+0.4
5,895,953	-		BT4480	0.57	-1.9
5,896,001	-		BT4480	0.59	-2.6
5,896,015	-		BT4480	0.59	-1.4
5,896,113	-		BT4480	0.62	-2.2
5,896,218	-		BT4480	0.65	+0.1
5,896,234	-		BT4480	0.65	+1.0
5,896,234	-		BT4480	0.65	+0.4
5,896,250	-		BT4480	0.65	+1.4
5,896,374	-		BT4480	0.69	-0.6
5,896,427	-		BT4480	0.70	-0.6
5,896,427	-		BT4480	0.70	-0.2
5,896,427	-		BT4480	0.70	-0.3
5,896,431	-		BT4480	0.70	-1.6
5,896,556	-		BT4480	0.74	-0.5
5,896,600	+		BT4480	0.75	-1.6
5,896,611	+		BT4480	0.75	-0.6
5,896,611	+		BT4480	0.75	-0.2
5,896,697	-		BT4480	0.78	+0.4
5,896,812	-		BT4480	0.81	-1.6
5,896,812	-		BT4480	0.81	-1.6
5,896,816	+		BT4480	0.81	+0.4
5,896,847	-		BT4480	0.82	-2.2
5,896,849	+		BT4480	0.82	+1.0
5,896,853	+		BT4480	0.82	+0.4
5,896,854	-		BT4480	0.82	-1.2
5,896,854	-		BT4480	0.82	-1.9
5,896,855	+		BT4480	0.82	-0.8
5,896,872	-		BT4480	0.83	-0.3
5,896,873	+		BT4480	0.83	-1.2
5,896,877	+		BT4480	0.83	-0.2
5,896,878	-		BT4480	0.83	-1.6
5,896,880	+		BT4480	0.83	-1.2
5,896,881	-		BT4480	0.83	-0.5
5,896,883	-		BT4480	0.83	-1.2
5,896,901	-		BT4480	0.83	-0.9
5,896,993	-		BT4480	0.86	+0.8
5,896,994	+		BT4480	0.86	-1.2
5,897,024	-		BT4480	0.87	-0.8
5,897,027	+		BT4480	0.87	+0.4
5,897,029	+		BT4480	0.87	-1.5
5,897,029	+		BT4480	0.87	-1.2
5,897,059	+		BT4480	0.88	+0.4
5,897,072	+		BT4480	0.88	+0.4
5,897,073	-		BT4480	0.88	-1.6
5,897,083	+		BT4480	0.88	+1.4
5,897,123	-		BT4480	0.90	-3.4
5,897,252	+				-1.2
5,897,305	-				-1.2
5,897,329	+				+0.4
5,897,350	+				-1.2
5,897,393	-				+0.4
5,897,411	-				-0.6
5,897,411	-				-1.1
5,897,414	+				-2.6
5,897,480	-				+1.0
5,897,486	-				-0.4
5,897,581	-				-0.9
5,897,602	-				-1.2
5,897,602	-				-1.6
5,897,624	-				-0.8
5,897,653	+				-1.7
5,897,656	+				+0.4
5,897,656	+				+0.4
5,897,662	+				+0.4
5,897,833	+		BT4481	0.18	-0.6
5,897,834	-		BT4481	0.18	-0.6
5,897,839	-				-1.9
5,897,935	-		BT4481	0.28	-1.3
5,898,190	+		BT4481	0.51	+1.0
5,898,299	+		BT4481	0.61	-0.6
5,898,300	-		BT4481	0.61	-1.0
5,898,317	-		BT4481	0.63	-0.6
5,898,321	+		BT4481	0.63	-0.6
5,898,340	+		BT4481	0.65	-0.6
5,898,492	+		BT4481	0.79	-1.9
5,898,493	-		BT4481	0.79	-0.9
5,898,493	-		BT4481	0.79	-1.2