Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4176

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
5,497,800	-		BT4175	0.51	-1.1
5,497,800	-		BT4175	0.51	-0.2
5,497,803	-		BT4175	0.51	+0.4
5,497,804	+		BT4175	0.51	-1.3
5,497,804	+		BT4175	0.51	-0.6
5,497,827	-		BT4175	0.53	+1.4
5,497,873	+		BT4175	0.55	-1.1
5,497,877	-		BT4175	0.55	-1.6
5,497,916	-		BT4175	0.57	-0.3
5,497,936	-		BT4175	0.59	-0.7
5,497,963	-		BT4175	0.60	-0.7
5,497,964	+		BT4175	0.60	-1.8
5,497,976	-		BT4175	0.61	-1.4
5,497,976	-		BT4175	0.61	+0.9
5,497,976	-		BT4175	0.61	+1.4
5,498,003	+		BT4175	0.62	+1.0
5,498,128	+		BT4175	0.69	-0.8
5,498,159	-		BT4175	0.71	-0.7
5,498,161	+		BT4175	0.71	-1.5
5,498,162	-		BT4175	0.71	+0.4
5,498,162	-		BT4175	0.71	-1.1
5,498,191	+		BT4175	0.72	+0.4
5,498,352	+		BT4175	0.81	-2.1
5,498,363	+		BT4175	0.82	-3.0
5,498,363	+		BT4175	0.82	-1.1
5,498,458	+		BT4175	0.87	-0.6
5,498,458	+		BT4175	0.87	-1.1
5,498,491	-		BT4175	0.89	-1.6
5,498,491	-		BT4175	0.89	-2.7
5,498,558	-				-2.1
5,498,612	+				-0.6
5,498,615	-				+0.4
5,498,680	+				-2.2
5,498,681	-				-1.9
5,498,685	+				-1.1
5,498,702	-				-0.5
5,498,714	-				-1.1
5,498,746	-				-1.0
5,498,831	+				-2.3
5,498,890	-		BT4176	0.13	-1.6
5,498,927	-		BT4176	0.16	-0.6
5,498,950	+		BT4176	0.18	-2.4
5,498,951	-		BT4176	0.18	-1.6
5,499,135	-		BT4176	0.31	-2.4
5,499,211	-		BT4176	0.36	-2.9
5,499,214	+		BT4176	0.37	-0.6
5,499,268	+		BT4176	0.40	+0.4
5,499,305	+		BT4176	0.43	+1.4
5,499,305	+		BT4176	0.43	-2.1
5,499,306	-		BT4176	0.43	-1.6
5,499,306	-		BT4176	0.43	-1.1
5,499,377	-		BT4176	0.48	-1.3
5,499,478	+		BT4176	0.56	-1.3
5,499,479	-		BT4176	0.56	+0.4
5,499,589	-		BT4176	0.63	+0.4
5,499,644	+		BT4176	0.67	-3.3
5,499,728	+		BT4176	0.73	-1.9
5,499,759	+		BT4176	0.76	-0.6
5,499,759	+		BT4176	0.76	-1.6
5,499,809	+		BT4176	0.79	-1.1
5,499,920	+		BT4176	0.87	-1.9
5,499,942	+		BT4176	0.89	-1.1
5,499,943	-		BT4176	0.89	-0.6
5,499,943	-		BT4176	0.89	+0.4
5,499,943	-		BT4176	0.89	-1.6
5,499,943	-		BT4176	0.89	-1.3
5,499,944	+		BT4176	0.89	-2.6
5,500,091	-				-1.2
5,500,091	-				-3.0
5,500,098	-				+2.0
5,500,098	-				+0.4
5,500,101	+				+1.4
5,500,122	+				+0.4
5,500,251	-		BT4177	0.38	+0.4
5,500,259	+		BT4177	0.41	-1.2
5,500,260	-		BT4177	0.41	-1.6
5,500,367	-		BT4177	0.75	-0.8
5,500,375	+		BT4177	0.78	+0.4
5,500,414	-				-2.6
5,500,464	+				-1.9
5,500,509	-				-1.6
5,500,513	-				+0.4
5,500,527	+				-2.8
5,500,566	-				-1.9
5,500,587	-				-3.1
5,500,603	+				-1.7
5,500,604	-				-0.9
5,500,723	-				-2.1
5,500,760	-				-0.7
5,500,769	-				-1.9
5,500,849	-				-1.6
5,500,856	+				+0.4
5,500,890	-				-1.6
5,500,939	+				-1.1
5,500,975	-				-1.0
5,500,985	-				+0.4
5,500,997	+				-1.1
5,501,008	+				-1.9