Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4114

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
5,383,778	+		BT4113	0.48	-0.6
5,383,782	+		BT4113	0.48	-0.3
5,383,816	+		BT4113	0.50	-0.6
5,383,821	+		BT4113	0.50	-2.6
5,383,821	+		BT4113	0.50	+2.0
5,383,821	+		BT4113	0.50	-1.2
5,383,853	+		BT4113	0.52	-2.5
5,383,909	+		BT4113	0.55	-3.9
5,383,937	+		BT4113	0.57	-0.9
5,383,995	+		BT4113	0.60	-0.9
5,384,007	-		BT4113	0.60	+0.4
5,384,091	+		BT4113	0.65	-1.2
5,384,092	-		BT4113	0.65	+1.4
5,384,099	+		BT4113	0.65	-1.9
5,384,132	+		BT4113	0.67	-1.4
5,384,269	+		BT4113	0.75	+0.4
5,384,270	-		BT4113	0.75	-1.2
5,384,270	-		BT4113	0.75	-1.6
5,384,288	+		BT4113	0.76	-1.6
5,384,339	-		BT4113	0.78	-0.2
5,384,386	+		BT4113	0.81	-0.8
5,384,433	-		BT4113	0.83	-0.6
5,384,482	-		BT4113	0.86	+0.4
5,384,482	-		BT4113	0.86	+0.4
5,384,495	+		BT4113	0.87	+0.4
5,384,509	-		BT4113	0.87	-1.5
5,384,516	+		BT4113	0.88	-0.6
5,384,528	-		BT4113	0.88	+0.4
5,384,528	-		BT4113	0.88	+0.1
5,384,571	+				+0.4
5,384,575	+				-0.3
5,384,576	-				+1.0
5,384,636	+				-1.0
5,384,636	+				-1.9
5,384,716	-				+0.4
5,384,716	-				-1.9
5,384,726	-				-0.6
5,384,727	+				-0.6
5,384,741	+				-1.5
5,384,744	+				-1.6
5,384,782	+				-1.2
5,384,809	+				-3.5
5,384,851	-				-1.7
5,384,895	-				-2.0
5,384,925	+				-0.1
5,384,979	-				-0.6
5,384,982	+				+0.4
5,384,982	+				-1.2
5,385,029	-				-0.6
5,385,029	-				+0.4
5,385,060	-				-1.5
5,385,060	-				-2.4
5,385,102	-		BT4114	0.11	+0.4
5,385,118	-		BT4114	0.11	+0.4
5,385,188	+		BT4114	0.13	+0.4
5,385,232	+		BT4114	0.15	+0.4
5,385,233	-		BT4114	0.15	-3.0
5,385,276	-		BT4114	0.16	-2.2
5,385,335	+		BT4114	0.18	-0.6
5,385,363	+		BT4114	0.19	+2.0
5,385,380	+		BT4114	0.19	-0.2
5,385,398	-		BT4114	0.20	-0.9
5,385,501	+		BT4114	0.23	-0.8
5,385,592	+		BT4114	0.26	-1.7
5,385,593	-		BT4114	0.26	-1.4
5,385,600	+		BT4114	0.26	-1.0
5,385,605	+		BT4114	0.26	-0.6
5,385,609	+		BT4114	0.27	-1.3
5,385,664	+		BT4114	0.28	+0.4
5,385,674	+		BT4114	0.29	-1.2
5,385,700	-		BT4114	0.29	-1.6
5,385,749	+		BT4114	0.31	-1.6
5,385,818	+		BT4114	0.33	-1.8
5,385,980	+		BT4114	0.38	-1.6
5,385,981	-		BT4114	0.38	-0.3
5,385,981	-		BT4114	0.38	-2.9
5,386,023	-		BT4114	0.39	+0.4
5,386,028	-		BT4114	0.40	-0.8
5,386,120	-		BT4114	0.42	-1.2
5,386,190	-		BT4114	0.45	+0.2
5,386,193	+		BT4114	0.45	-1.4
5,386,193	+		BT4114	0.45	-2.7
5,386,193	+		BT4114	0.45	-0.1
5,386,208	-		BT4114	0.45	+2.0
5,386,252	+		BT4114	0.47	+2.4
5,386,355	+		BT4114	0.50	-0.6
5,386,401	-		BT4114	0.51	-0.2
5,386,417	-		BT4114	0.52	+0.4
5,386,452	-		BT4114	0.53	-0.6
5,386,454	+		BT4114	0.53	-3.6
5,386,532	+		BT4114	0.55	-2.0
5,386,564	+		BT4114	0.56	-2.3
5,386,626	-		BT4114	0.58	-0.8
5,386,748	+		BT4114	0.62	-0.6
5,386,769	+		BT4114	0.63	-3.3
5,386,833	-		BT4114	0.65	-2.2
5,386,833	-		BT4114	0.65	-1.4
5,386,845	+		BT4114	0.65	+0.4
5,387,019	-		BT4114	0.70	-1.2
5,387,113	+		BT4114	0.73	-1.5
5,387,133	-		BT4114	0.74	-2.2
5,387,148	-		BT4114	0.74	-1.7
5,387,167	+		BT4114	0.75	-0.9
5,387,182	+		BT4114	0.75	+0.4
5,387,237	-		BT4114	0.77	+0.1
5,387,243	+		BT4114	0.77	+0.4
5,387,246	-		BT4114	0.77	-0.7
5,387,246	-		BT4114	0.77	-0.6
5,387,320	+		BT4114	0.80	-0.6
5,387,320	+		BT4114	0.80	+0.0
5,387,320	+		BT4114	0.80	-2.0
5,387,320	+		BT4114	0.80	-1.7
5,387,320	+		BT4114	0.80	+1.4
5,387,325	-		BT4114	0.80	-0.2
5,387,330	+		BT4114	0.80	+0.4
5,387,331	-		BT4114	0.80	-1.8
5,387,357	+		BT4114	0.81	-1.2
5,387,357	+		BT4114	0.81	-1.7
5,387,390	+		BT4114	0.82	-2.6
5,387,390	+		BT4114	0.82	+1.0
5,387,421	+		BT4114	0.83	-1.5
5,387,422	-		BT4114	0.83	-2.6
5,387,444	+		BT4114	0.84	+0.4
5,387,511	+		BT4114	0.86	-1.2
5,387,512	-		BT4114	0.86	-1.6
5,387,562	+		BT4114	0.87	-1.2
5,387,563	-		BT4114	0.87	-1.2
5,387,583	-		BT4114	0.88	-1.3
5,387,624	+		BT4114	0.89	-2.7
5,387,673	+				+0.4
5,387,678	+				+0.4
5,387,679	-				-1.6
5,387,734	+				+0.4
5,387,745	+				-1.6
5,387,746	-				-2.2
5,387,801	+				-2.9
5,387,914	-				-1.8
5,387,993	-				-0.0
5,387,995	+				-0.2
5,387,996	-				+0.4
5,388,070	+				-1.2
5,388,143	+				+0.4
5,388,144	-				+0.4
5,388,238	+				-1.4
5,388,239	-				+1.4
5,388,239	-				-1.6
5,388,257	-				-1.0
5,388,263	+				+1.0
5,388,274	+				-0.4
5,388,275	-				-0.6
5,388,377	+		BT4115	0.13	-2.9
5,388,402	+		BT4115	0.14	-1.2
5,388,403	-		BT4115	0.14	-0.6
5,388,531	+		BT4115	0.23	+0.4
5,388,569	+		BT4115	0.25	-0.8
5,388,581	+		BT4115	0.26	-1.6
5,388,650	+		BT4115	0.31	-0.2
5,388,830	-		BT4115	0.43	-0.8
5,388,842	+		BT4115	0.44	+1.4
5,388,887	-		BT4115	0.47	+2.4
5,388,910	+		BT4115	0.48	-0.1
5,388,921	-		BT4115	0.49	-1.6
5,388,961	+		BT4115	0.52	+0.0