Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4105

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
5,366,295	+		BT4104	0.82	-0.5
5,366,299	+		BT4104	0.82	+0.4
5,366,300	-		BT4104	0.82	-0.6
5,366,304	+		BT4104	0.82	-1.5
5,366,325	+		BT4104	0.83	+0.4
5,366,326	-		BT4104	0.83	-1.1
5,366,326	-		BT4104	0.83	-0.6
5,366,366	-		BT4104	0.84	-0.6
5,366,530	-		BT4104	0.89	-1.1
5,366,577	+				-1.6
5,366,578	-				-2.0
5,366,619	-				+1.7
5,366,651	+				-1.6
5,366,652	-				+1.4
5,366,722	+				+1.0
5,366,729	-				-0.6
5,367,071	-				+0.4
5,367,078	-				+0.4
5,367,081	-				-0.6
5,367,208	+				-1.0
5,367,209	-				-0.9
5,367,271	+				-0.7
5,367,276	-				-0.7
5,367,277	+				+0.4
5,367,374	+				+1.0
5,367,507	+		BT4105	0.15	-0.6
5,367,507	+		BT4105	0.15	-1.6
5,367,508	-		BT4105	0.15	-1.1
5,367,510	-		BT4105	0.15	-1.1
5,367,510	-		BT4105	0.15	-0.2
5,367,521	-		BT4105	0.16	-0.3
5,367,583	+		BT4105	0.20	-1.1
5,367,584	-		BT4105	0.20	-0.6
5,367,610	+		BT4105	0.22	-0.8
5,367,610	+		BT4105	0.22	+0.0
5,367,617	+		BT4105	0.22	-0.6
5,367,632	-		BT4105	0.23	+0.4
5,367,725	+		BT4105	0.30	-1.1
5,367,766	+		BT4105	0.32	-0.6
5,367,766	+		BT4105	0.32	-2.4
5,367,808	+		BT4105	0.35	-0.6
5,367,808	+		BT4105	0.35	-1.7
5,367,829	-		BT4105	0.37	+0.4
5,367,829	-		BT4105	0.37	-1.9
5,367,918	+		BT4105	0.43	-0.9
5,367,919	-		BT4105	0.43	+0.9
5,367,950	+		BT4105	0.45	+0.4
5,367,950	+		BT4105	0.45	-1.1
5,367,950	+		BT4105	0.45	-1.9
5,367,950	+		BT4105	0.45	-1.8
5,367,951	-		BT4105	0.45	+2.0
5,367,951	-		BT4105	0.45	-1.1
5,367,970	+		BT4105	0.46	-1.9
5,368,087	+		BT4105	0.54	-1.2
5,368,089	+		BT4105	0.54	+0.0
5,368,138	-		BT4105	0.57	-0.1
5,368,138	-		BT4105	0.57	-1.3
5,368,141	+		BT4105	0.58	+0.4
5,368,142	-		BT4105	0.58	+0.4
5,368,145	+		BT4105	0.58	-0.6
5,368,373	-		BT4105	0.73	-2.0
5,368,373	-		BT4105	0.73	-1.9
5,368,396	-		BT4105	0.75	-0.6
5,368,396	-		BT4105	0.75	-2.5
5,368,469	+		BT4105	0.80	-0.6
5,368,469	+		BT4105	0.80	-1.9
5,368,485	-		BT4105	0.81	-1.7
5,368,489	+		BT4105	0.81	-1.0
5,368,526	+		BT4105	0.83	+0.1
5,368,526	+		BT4105	0.83	-0.6
5,368,594	+		BT4105	0.88	+1.4
5,368,594	+		BT4105	0.88	-1.4
5,368,595	-		BT4105	0.88	-1.9
5,368,595	-		BT4105	0.88	+1.4
5,368,598	+		BT4105	0.88	+0.0
5,368,598	+		BT4105	0.88	-0.6
5,368,598	+		BT4105	0.88	-0.1
5,368,599	-		BT4105	0.88	-0.7
5,368,620	-		BT4105	0.90	-0.6
5,368,695	-				-0.4
5,368,697	+				+0.4
5,368,697	+				-1.4
5,368,718	-				-1.6
5,368,720	-				-1.1
5,368,723	+				-2.6
5,368,727	-				-2.0
5,368,905	+				-1.0
5,368,906	-				+0.4
5,368,913	-				-1.4
5,368,925	+				+0.0
5,368,934	-				-3.6
5,368,934	-				-0.6
5,369,082	-				-2.1
5,369,101	+				-2.0
5,369,138	+				-0.6
5,369,138	+				-1.1
5,369,141	-				-1.9
5,369,169	-		BT4106	0.12	-0.6
5,369,189	+		BT4106	0.14	+0.4
5,369,189	+		BT4106	0.14	-1.7
5,369,211	+		BT4106	0.16	-0.3
5,369,212	-		BT4106	0.16	-2.3
5,369,284	+		BT4106	0.24	-0.1
5,369,284	+		BT4106	0.24	+0.4
5,369,331	+		BT4106	0.29	-0.6
5,369,331	+		BT4106	0.29	+0.7
5,369,332	-		BT4106	0.29	-2.1
5,369,391	+		BT4106	0.36	-0.7
5,369,391	+		BT4106	0.36	-2.3
5,369,605	-		BT4106	0.59	-1.4
5,369,608	+		BT4106	0.59	-0.4
5,369,609	-		BT4106	0.60	-1.9
5,369,633	+		BT4106	0.62	-2.4
5,369,634	-		BT4106	0.62	+1.0
5,369,634	-		BT4106	0.62	-2.1
5,369,661	-		BT4106	0.65	-1.9
5,369,682	-		BT4106	0.67	-1.6