Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2419

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
3,020,041	-				+0.4
3,020,041	-				-0.5
3,020,098	+				+1.4
3,020,194	-		BT2418	0.25	+0.4
3,020,196	+		BT2418	0.26	+0.9
3,020,200	+		BT2418	0.27	+0.4
3,020,201	-		BT2418	0.27	-1.6
3,020,201	-		BT2418	0.27	-0.1
3,020,220	-		BT2418	0.32	-1.6
3,020,221	+		BT2418	0.32	-1.9
3,020,221	+		BT2418	0.32	-1.1
3,020,221	+		BT2418	0.32	+0.4
3,020,349	+		BT2418	0.65	-0.1
3,020,357	+		BT2418	0.67	+1.0
3,020,358	-		BT2418	0.67	-1.5
3,020,371	-		BT2418	0.71	-0.6
3,020,412	-		BT2418	0.81	-1.6
3,020,415	-		BT2418	0.82	-2.1
3,020,415	-		BT2418	0.82	-0.3
3,020,435	+		BT2418	0.87	-1.4
3,020,455	+				-1.1
3,020,503	+				+0.4
3,020,544	+				-0.9
3,020,787	+				-1.5
3,020,793	+				-0.6
3,020,794	-				-1.6
3,020,838	+				-1.0
3,020,838	+				+0.4
3,020,838	+				-0.6
3,020,865	+				-0.6
3,020,866	-				-1.9
3,020,907	-				+0.4
3,020,929	+				-1.1
3,020,930	-				-0.6
3,020,930	-				-1.6
3,020,942	-				-1.9
3,020,944	-				-1.0
3,020,950	-				+6.1
3,020,987	-				-0.8
3,020,987	-				-3.4
3,020,991	+				-2.1
3,020,991	+				-0.9
3,020,991	+				+0.4
3,020,992	-				+0.4
3,021,029	-				-1.0
3,021,074	-				-1.9
3,021,077	-				+0.4
3,021,093	-		BT2419	0.11	-1.2
3,021,254	+		BT2419	0.23	-0.6
3,021,296	+		BT2419	0.27	+0.1
3,021,297	-		BT2419	0.27	+0.4
3,021,342	+		BT2419	0.30	+0.8
3,021,342	+		BT2419	0.30	-0.9
3,021,443	+		BT2419	0.38	-1.1
3,021,449	-		BT2419	0.38	-2.6
3,021,449	-		BT2419	0.38	+0.4
3,021,505	-		BT2419	0.43	-0.6
3,021,545	-		BT2419	0.46	-0.6
3,021,648	-		BT2419	0.54	-1.9
3,021,653	+		BT2419	0.54	-1.6
3,021,654	-		BT2419	0.54	-1.0
3,021,654	-		BT2419	0.54	-0.7
3,021,780	-		BT2419	0.64	+0.4
3,021,827	+		BT2419	0.67	-1.6
3,021,923	+		BT2419	0.75	-1.5
3,021,923	+		BT2419	0.75	-0.6
3,021,924	-		BT2419	0.75	+0.1
3,021,935	+		BT2419	0.75	-0.6
3,021,938	-		BT2419	0.76	+1.1
3,021,946	+		BT2419	0.76	+0.4
3,021,958	+		BT2419	0.77	-2.4
3,021,968	-		BT2419	0.78	-0.6
3,022,037	-		BT2419	0.83	+0.0
3,022,039	-		BT2419	0.83	+0.4
3,022,099	+		BT2419	0.88	+0.4
3,022,102	+		BT2419	0.88	-1.1
3,022,103	-		BT2419	0.88	+0.4
3,022,103	-		BT2419	0.88	-1.1
3,022,105	+		BT2419	0.88	-1.9
3,022,105	+		BT2419	0.88	-0.8
3,022,170	+				-0.6
3,022,170	+				-1.4
3,022,235	-				+1.4
3,022,272	+				-2.6
3,022,273	-				+0.4
3,022,278	-				-1.1
3,022,281	-				-1.1
3,022,281	-				-1.1
3,022,283	-				-0.7
3,022,312	-				-1.0
3,022,599	+		BT2420	0.11	-2.4
3,022,660	-		BT2420	0.15	-0.6
3,022,750	+		BT2420	0.21	+0.4
3,022,801	+		BT2420	0.25	-1.1
3,022,848	+		BT2420	0.28	-2.4
3,022,856	+		BT2420	0.29	-1.1
3,022,856	+		BT2420	0.29	-0.6
3,022,857	-		BT2420	0.29	-1.1
3,022,857	-		BT2420	0.29	+0.4
3,022,862	-		BT2420	0.29	-1.4
3,022,883	-		BT2420	0.31	-0.1
3,022,894	+		BT2420	0.31	+0.4
3,022,895	-		BT2420	0.31	-0.9
3,022,927	-		BT2420	0.34	-1.2
3,023,035	+		BT2420	0.41	-0.9
3,023,098	-		BT2420	0.45	-0.6
3,023,104	-		BT2420	0.46	-1.1
3,023,140	-		BT2420	0.48	-1.9
3,023,140	-		BT2420	0.48	-1.1
3,023,165	-		BT2420	0.50	-2.0
3,023,200	+		BT2420	0.52	-0.4
3,023,213	+		BT2420	0.53	-1.1
3,023,213	+		BT2420	0.53	-0.6
3,023,250	-		BT2420	0.56	+0.4
3,023,251	+		BT2420	0.56	-1.5
3,023,251	+		BT2420	0.56	+0.4