Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1000

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
1,241,938	-		BT0999	0.27	-2.0
1,241,982	+		BT0999	0.35	-2.5
1,241,982	+		BT0999	0.35	+0.3
1,242,014	+		BT0999	0.40	-1.0
1,242,021	+		BT0999	0.42	-3.5
1,242,071	-		BT0999	0.51	-0.7
1,242,099	+		BT0999	0.56	-1.7
1,242,164	-		BT0999	0.68	-0.3
1,242,293	+				-0.5
1,242,293	+				-2.7
1,242,307	-				-0.3
1,242,309	+				+0.3
1,242,313	+				-2.8
1,242,314	-				-0.8
1,242,471	-				-1.3
1,242,535	+				-1.3
1,242,754	+				-1.5
1,242,762	+				-0.3
1,242,762	+				+0.9
1,242,807	-				+0.3
1,242,931	+				-1.7
1,242,973	-				-1.7
1,242,974	+				+0.3
1,242,975	-				-1.1
1,242,975	-				-2.3
1,242,975	-				-2.0
1,242,975	-				-1.9
1,242,995	+				-1.3
1,243,025	+				-0.3
1,243,026	-				+1.3
1,243,027	+				-2.0
1,243,027	+				+0.3
1,243,028	-				-0.7
1,243,028	-				-1.3
1,243,037	-				-2.7
1,243,039	-				+1.3
1,243,039	-				-1.3
1,243,167	-		BT1000	0.14	+0.9
1,243,222	-		BT1000	0.17	+0.9
1,243,274	-		BT1000	0.19	+0.3
1,243,277	+		BT1000	0.19	+0.3
1,243,277	+		BT1000	0.19	+1.3
1,243,380	+		BT1000	0.23	+0.3
1,243,383	-		BT1000	0.23	-1.3
1,243,384	+		BT1000	0.23	-0.7
1,243,443	-				+0.9
1,243,484	-		BT1000	0.28	-0.7
1,243,489	+		BT1000	0.28	-1.0
1,243,573	+		BT1000	0.31	-1.3
1,243,578	-		BT1000	0.31	-0.2
1,243,578	-		BT1000	0.31	-0.7
1,243,630	+		BT1000	0.34	+0.3
1,243,644	-		BT1000	0.34	-0.5
1,243,652	-		BT1000	0.34	+0.3
1,243,686	-		BT1000	0.36	-0.8
1,243,707	-		BT1000	0.37	-0.7
1,243,724	-		BT1000	0.37	-0.3
1,243,753	+		BT1000	0.39	+1.3
1,243,967	+				-0.7
1,243,967	+		BT1000	0.48	+0.3
1,243,979	+		BT1000	0.48	-0.4
1,243,994	-		BT1000	0.49	+0.3
1,244,080	-		BT1000	0.52	-0.7
1,244,090	-		BT1000	0.53	-0.9
1,244,128	+		BT1000	0.54	-0.7
1,244,129	-		BT1000	0.54	+1.3
1,244,167	-		BT1000	0.56	-0.9
1,244,291	-		BT1000	0.61	-1.3
1,244,309	+		BT1000	0.62	+0.3
1,244,358	+		BT1000	0.64	-0.3
1,244,362	+		BT1000	0.64	-1.7
1,244,363	-		BT1000	0.64	-0.3
1,244,442	+		BT1000	0.67	-0.9
1,244,478	-		BT1000	0.69	-0.7
1,244,480	+		BT1000	0.69	-1.3
1,244,512	+		BT1000	0.70	-1.0
1,244,525	+		BT1000	0.71	-2.3
1,244,560	+		BT1000	0.72	+0.3
1,244,575	+		BT1000	0.73	-0.7
1,244,583	-		BT1000	0.73	-0.5
1,244,583	-		BT1000	0.73	-0.9
1,244,892	-		BT1000	0.86	-0.3
1,244,904	+		BT1000	0.86	+1.3
1,245,017	+				-0.4
1,245,033	-				-2.8
1,245,061	+				-1.3
1,245,063	+				-1.7
1,245,117	+				-1.4
1,245,166	+				-0.8
1,245,166	+				-2.8
1,245,178	+				-1.3
1,245,179	-				-0.1
1,245,179	-				-1.5
1,245,214	-				-1.2
1,245,219	-				-1.0
1,245,233	-				-1.3
1,245,254	+				+0.7
1,245,335	-				+0.9
1,245,393	+				+0.9
1,245,393	+				+0.9
1,245,400	-				-1.1
1,245,436	+				-1.3
1,245,450	-				-2.3
1,245,588	-				-0.4
1,245,636	+				-0.7
1,245,724	+		BT1001	0.13	-0.7
1,245,731	+		BT1001	0.14	-0.3
1,245,743	-		BT1001	0.14	+0.3
1,245,746	+		BT1001	0.14	-1.1
1,245,746	+		BT1001	0.14	-1.3
1,245,797	-		BT1001	0.17	-0.9
1,245,836	-		BT1001	0.18	-1.1
1,245,903	+		BT1001	0.21	-1.4
1,245,958	+		BT1001	0.24	-3.3
1,245,959	-		BT1001	0.24	+0.1
1,245,959	-		BT1001	0.24	-0.7
1,246,058	+		BT1001	0.28	-0.7
1,246,058	+		BT1001	0.28	+0.3
1,246,059	-		BT1001	0.28	-0.7
1,246,061	+		BT1001	0.29	-1.7
1,246,173	+		BT1001	0.34	-1.4