Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4272

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
5,627,560	-				-1.4
5,627,565	+				-0.7
5,627,639	+				+0.6
5,627,653	-				-0.5
5,627,659	-				-1.5
5,627,660	+				+0.8
5,627,702	-				+1.0
5,627,721	-				-1.3
5,627,801	-				-1.0
5,627,855	+				+1.6
5,627,989	+		BT4271	0.23	-0.0
5,627,989	+		BT4271	0.23	+1.0
5,628,068	-		BT4271	0.34	-1.9
5,628,068	-		BT4271	0.34	-0.6
5,628,180	-		BT4271	0.50	-1.0
5,628,205	-		BT4271	0.54	-1.8
5,628,205	-		BT4271	0.54	-2.0
5,628,398	+		BT4271	0.81	-1.6
5,628,471	+				-0.7
5,628,565	+				-0.0
5,628,566	-				-1.3
5,628,569	+				-2.8
5,628,570	-				-1.4
5,628,570	-				+2.0
5,628,599	+				-0.9
5,628,606	+				-1.4
5,628,627	-				+0.2
5,628,627	-				-1.6
5,628,703	+				-1.4
5,628,854	+		BT4272	0.11	-1.0
5,628,994	-		BT4272	0.15	-1.3
5,629,000	+		BT4272	0.15	-2.2
5,629,000	+		BT4272	0.15	+1.0
5,629,052	+		BT4272	0.17	-0.0
5,629,053	-		BT4272	0.17	-1.8
5,629,127	+		BT4272	0.20	+1.0
5,629,127	+		BT4272	0.20	-0.9
5,629,128	-		BT4272	0.20	-1.8
5,629,142	-		BT4272	0.20	-1.0
5,629,164	+		BT4272	0.21	-2.0
5,629,216	+		BT4272	0.23	-0.8
5,629,286	+		BT4272	0.25	-1.8
5,629,288	+		BT4272	0.25	-1.8
5,629,300	-		BT4272	0.26	-1.9
5,629,374	+		BT4272	0.28	-0.6
5,629,402	+		BT4272	0.29	+1.0
5,629,407	+		BT4272	0.29	-0.4
5,629,407	+		BT4272	0.29	-1.0
5,629,408	-		BT4272	0.29	-0.0
5,629,414	+		BT4272	0.29	-1.0
5,629,433	+		BT4272	0.30	+2.0
5,629,491	-		BT4272	0.32	-2.1
5,629,498	+		BT4272	0.32	-2.6
5,629,507	-		BT4272	0.32	-0.9
5,629,541	-		BT4272	0.34	-1.8
5,629,562	-		BT4272	0.34	-3.7
5,629,781	+		BT4272	0.42	-1.5
5,629,785	+		BT4272	0.42	-2.0
5,629,813	+		BT4272	0.43	-2.0
5,629,822	-		BT4272	0.43	-1.0
5,629,901	+		BT4272	0.46	-1.9
5,630,171	-		BT4272	0.55	-0.4
5,630,341	-		BT4272	0.60	-1.3
5,630,348	-		BT4272	0.61	-1.6
5,630,351	-		BT4272	0.61	-1.1
5,630,415	+		BT4272	0.63	-0.0
5,630,415	+		BT4272	0.63	-0.6
5,630,475	+		BT4272	0.65	-0.0
5,630,491	-		BT4272	0.65	-0.0
5,630,616	-		BT4272	0.70	-1.8
5,630,648	+		BT4272	0.71	+1.0
5,630,679	+		BT4272	0.72	-0.8
5,630,688	+		BT4272	0.72	-1.9
5,630,688	+		BT4272	0.72	-1.3
5,630,688	+		BT4272	0.72	-0.2
5,630,689	-		BT4272	0.72	-1.2
5,630,848	-		BT4272	0.77	-2.6
5,630,855	-		BT4272	0.77	-2.8
5,630,855	-		BT4272	0.77	-0.0
5,630,855	-		BT4272	0.77	-2.0
5,630,856	+		BT4272	0.78	-1.7
5,630,858	-		BT4272	0.78	-1.8
5,630,911	-		BT4272	0.79	-2.1
5,630,954	-		BT4272	0.81	-1.1
5,631,022	-		BT4272	0.83	-1.0
5,631,035	-		BT4272	0.84	-0.0
5,631,047	+		BT4272	0.84	-1.8
5,631,111	+		BT4272	0.86	-1.0
5,631,111	+		BT4272	0.86	-2.6
5,631,112	-		BT4272	0.86	-0.8
5,631,172	-		BT4272	0.88	-0.6
5,631,211	-		BT4272	0.89	+1.0
5,631,228	+		BT4272	0.90	+1.6
5,631,236	-				-1.0
5,631,260	+				-1.5
5,631,288	+				-0.1
5,631,332	-				-1.6
5,631,357	+				-1.1
5,631,358	-				-0.0
5,631,440	-				+1.0
5,631,443	+				-1.0
5,631,443	+				+0.6
5,631,448	+				+1.0
5,631,512	+				-2.4
5,631,512	+				-1.7
5,631,588	-				-0.0
5,631,595	-				-2.8
5,631,638	+				+0.7
5,631,655	+				-1.3
5,631,722	+				+1.0
5,631,724	+				-1.6
5,631,732	+				-0.0
5,631,768	+		BT4273	0.11	-2.0
5,631,781	-		BT4273	0.12	-1.0
5,631,830	-		BT4273	0.15	-1.6
5,631,831	+		BT4273	0.15	-1.2
5,631,956	-		BT4273	0.23	-0.4
5,631,998	-		BT4273	0.26	-1.2
5,631,998	-		BT4273	0.26	-0.0
5,632,006	-		BT4273	0.26	-1.6
5,632,150	-		BT4273	0.36	-2.0
5,632,153	+		BT4273	0.36	-2.1
5,632,154	-		BT4273	0.36	-1.2
5,632,154	-		BT4273	0.36	+1.6
5,632,154	-		BT4273	0.36	-2.0
5,632,160	-		BT4273	0.36	-0.9
5,632,224	-		BT4273	0.40	-1.2
5,632,227	+		BT4273	0.41	+1.0
5,632,228	-		BT4273	0.41	-1.5
5,632,275	+		BT4273	0.44	-0.6
5,632,276	-		BT4273	0.44	-0.6
5,632,294	-		BT4273	0.45	-0.0
5,632,304	-		BT4273	0.46	+1.0
5,632,324	-		BT4273	0.47	+0.5
5,632,338	+		BT4273	0.48	-0.8
5,632,397	+		BT4273	0.52	+0.4
5,632,398	-		BT4273	0.52	-1.0
5,632,398	-		BT4273	0.52	-0.0
5,632,409	-		BT4273	0.52	-0.2
5,632,424	+		BT4273	0.53	-0.2
5,632,425	-		BT4273	0.53	-1.3