Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1899

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
2,387,205	+				-1.1
2,387,283	+		BT1898	0.12	-2.1
2,387,284	-		BT1898	0.12	-2.2
2,387,290	-		BT1898	0.12	+0.5
2,387,300	-		BT1898	0.14	+0.9
2,387,314	+		BT1898	0.15	-0.1
2,387,315	-		BT1898	0.15	+0.3
2,387,330	+		BT1898	0.17	-0.3
2,387,341	-		BT1898	0.18	+0.3
2,387,391	-		BT1898	0.23	-2.1
2,387,398	+		BT1898	0.24	-1.7
2,387,398	+		BT1898	0.24	+0.7
2,387,399	-		BT1898	0.24	-0.7
2,387,400	+		BT1898	0.24	-0.1
2,387,400	+		BT1898	0.24	-1.7
2,387,400	+		BT1898	0.24	-0.1
2,387,430	-		BT1898	0.27	-0.1
2,387,430	-		BT1898	0.27	-0.7
2,387,457	+		BT1898	0.30	-0.7
2,387,457	+		BT1898	0.30	-2.1
2,387,586	+		BT1898	0.44	-1.1
2,387,587	-		BT1898	0.44	+0.4
2,387,680	+		BT1898	0.54	-0.5
2,387,680	+		BT1898	0.54	+0.9
2,387,681	-		BT1898	0.54	-1.4
2,387,734	+		BT1898	0.60	-0.1
2,387,753	-		BT1898	0.62	-0.1
2,387,753	-		BT1898	0.62	-2.1
2,387,753	-		BT1898	0.62	-1.1
2,387,767	-		BT1898	0.64	-1.1
2,387,828	+		BT1898	0.70	+0.9
2,387,829	-		BT1898	0.70	-1.7
2,387,855	+		BT1898	0.73	+0.9
2,387,953	-		BT1898	0.83	-1.3
2,387,953	-		BT1898	0.83	-1.7
2,387,957	-		BT1898	0.84	-0.1
2,388,064	-				+0.9
2,388,079	+				-1.1
2,388,080	-				+0.9
2,388,135	+				-1.1
2,388,136	-				-2.9
2,388,136	-				-1.6
2,388,137	+				+0.9
2,388,149	-				-1.8
2,388,166	+				-1.1
2,388,331	+		BT1899	0.20	-2.4
2,388,332	-		BT1899	0.20	-1.6
2,388,336	+		BT1899	0.21	-1.5
2,388,336	+		BT1899	0.21	+1.3
2,388,353	+		BT1899	0.23	-1.4
2,388,354	-		BT1899	0.23	-0.1
2,388,378	-		BT1899	0.27	-4.1
2,388,439	-		BT1899	0.35	+1.5
2,388,446	+		BT1899	0.36	-0.1
2,388,523	-		BT1899	0.47	-0.1
2,388,524	+		BT1899	0.47	-2.9
2,388,559	+		BT1899	0.52	-1.1
2,388,560	-		BT1899	0.52	-1.1
2,388,601	+		BT1899	0.58	+0.9
2,388,669	+		BT1899	0.68	-1.6
2,388,670	-		BT1899	0.68	+1.5
2,388,670	-		BT1899	0.68	-2.4
2,388,701	+		BT1899	0.72	-0.6
2,388,726	+		BT1899	0.76	-0.1
2,388,752	+		BT1899	0.80	-1.0
2,388,753	-		BT1899	0.80	-0.1
2,388,774	-		BT1899	0.83	-0.6
2,388,780	+		BT1899	0.83	+5.0
2,388,783	-		BT1899	0.84	-0.8
2,388,798	-		BT1899	0.86	+2.3
2,388,851	-				-1.4
2,388,885	-				-1.7
2,389,015	+				-2.4
2,389,070	-		BT1900	0.12	-0.1
2,389,128	-		BT1900	0.17	-1.4
2,389,140	-		BT1900	0.17	-0.6
2,389,188	-		BT1900	0.21	-0.4
2,389,229	+		BT1900	0.24	-1.1
2,389,295	-		BT1900	0.29	+0.5
2,389,365	-		BT1900	0.34	-0.7
2,389,368	+		BT1900	0.35	-1.1
2,389,433	+		BT1900	0.40	-0.1
2,389,436	+		BT1900	0.40	-0.6
2,389,512	-		BT1900	0.46	-2.4
2,389,526	+		BT1900	0.47	-1.6
2,389,527	-		BT1900	0.47	-0.5
2,389,613	+		BT1900	0.53	-1.4
2,389,619	+		BT1900	0.54	+0.9
2,389,621	+		BT1900	0.54	-1.2
2,389,621	+		BT1900	0.54	-1.4
2,389,621	+		BT1900	0.54	-1.4
2,389,622	-		BT1900	0.54	-1.6
2,389,623	+		BT1900	0.54	-0.1
2,389,624	-		BT1900	0.54	-1.9
2,389,692	-		BT1900	0.59	+0.5
2,389,695	+		BT1900	0.59	-0.5
2,389,733	+		BT1900	0.62	-1.9
2,389,769	+		BT1900	0.65	+0.9
2,389,769	+		BT1900	0.65	-0.4