Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1600

Experiment: Starch soluble; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Starch soluble; autoclaved 2.5 mg/ml (C)
1,968,552	+		BT1598	0.80	+1.9
1,968,557	+		BT1598	0.80	-1.3
1,968,558	-		BT1598	0.80	-0.1
1,968,680	+		BT1598	0.87	+0.5
1,968,843	+				-1.1
1,968,843	+				-0.1
1,968,869	+				-0.1
1,968,982	+				-0.1
1,968,983	-				-2.4
1,968,986	+				-1.1
1,968,987	-				-2.1
1,969,131	-		BT1599	0.28	-0.1
1,969,132	+		BT1599	0.29	-3.4
1,969,133	-		BT1599	0.29	-0.1
1,969,134	+		BT1599	0.29	-1.4
1,969,135	-		BT1599	0.29	-1.1
1,969,135	-		BT1599	0.29	-0.6
1,969,135	-		BT1599	0.29	-2.4
1,969,140	+		BT1599	0.30	-1.6
1,969,221	+		BT1599	0.46	-1.7
1,969,221	+		BT1599	0.46	-1.8
1,969,307	-		BT1599	0.62	+1.5
1,969,341	-		BT1599	0.69	-0.1
1,969,422	-		BT1599	0.84	+0.2
1,969,438	+		BT1599	0.87	-1.3
1,969,495	+				-2.2
1,969,496	-				-1.6
1,969,600	+				-1.3
1,969,602	+				+0.3
1,969,602	+				-0.4
1,969,602	+				+0.5
1,969,603	-				-0.3
1,969,603	-				-0.3
1,969,606	+				-2.9
1,969,607	-				-0.1
1,969,607	-				-0.1
1,969,609	-		BT1600	0.10	-0.1
1,969,678	-		BT1600	0.19	+0.5
1,969,678	-		BT1600	0.19	+1.5
1,969,803	+		BT1600	0.35	-1.1
1,969,804	-		BT1600	0.35	-2.2
1,969,807	+		BT1600	0.36	-0.1
1,969,808	-		BT1600	0.36	-0.7
1,969,808	-		BT1600	0.36	-1.1
1,969,808	-		BT1600	0.36	-1.7
1,969,996	+		BT1600	0.60	-0.5
1,969,999	-		BT1600	0.60	+0.5
1,969,999	-		BT1600	0.60	+0.2
1,970,042	-		BT1600	0.66	-0.1
1,970,047	-		BT1600	0.67	-2.1
1,970,168	-		BT1600	0.82	-1.1
1,970,234	-				-1.4
1,970,236	+				-0.1
1,970,238	+				-1.4
1,970,239	-				-0.1
1,970,239	-				-1.1
1,970,252	+				-0.1
1,970,261	-				-0.8
1,970,262	+				-1.1