Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3925

Experiment: Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3924 and BT3925 are separated by 223 nucleotidesBT3925 and BT3926 are separated by 18 nucleotides BT3924: BT3924 - ATP-dependent DNA helicase recG (NCBI ptt file), at 5,097,042 to 5,099,138 BT3924 BT3925: BT3925 - nucleoside diphosphate kinase (NCBI ptt file), at 5,099,362 to 5,099,826 BT3925 BT3926: BT3926 - putative peptidase (NCBI ptt file), at 5,099,845 to 5,100,717 BT3926 Position (kb) 5099 5100Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5098.443 kb on - strand, within BT3924at 5099.339 kb on + strandat 5099.445 kb on + strand, within BT3925at 5099.495 kb on + strand, within BT3925at 5099.495 kb on + strand, within BT3925at 5099.587 kb on + strand, within BT3925at 5099.619 kb on + strand, within BT3925at 5099.637 kb on + strand, within BT3925at 5099.709 kb on + strand, within BT3925at 5099.771 kb on + strand, within BT3925at 5099.806 kb on + strandat 5100.580 kb on + strand, within BT3926at 5100.726 kb on + strandat 5100.727 kb on - strandat 5100.734 kb on + strandat 5100.735 kb on - strandat 5100.756 kb on - strandat 5100.795 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C)
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5,098,443 - BT3924 0.67 -1.6
5,099,339 + -0.6
5,099,445 + BT3925 0.18 -2.6
5,099,495 + BT3925 0.29 -0.5
5,099,495 + BT3925 0.29 -2.3
5,099,587 + BT3925 0.48 -0.8
5,099,619 + BT3925 0.55 -2.6
5,099,637 + BT3925 0.59 -2.9
5,099,709 + BT3925 0.75 -4.4
5,099,771 + BT3925 0.88 -1.6
5,099,806 + -2.0
5,100,580 + BT3926 0.84 -1.8
5,100,726 + -1.0
5,100,727 - +1.6
5,100,734 + +0.4
5,100,735 - -3.6
5,100,756 - -3.6
5,100,795 + -2.6

Or see this region's nucleotide sequence