Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3776

Experiment: Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C)
4,899,844	+				+1.6
4,899,854	+				+0.0
4,899,893	+				-2.6
4,900,036	+				-2.1
4,900,176	+				-2.6
4,900,177	-				+1.0
4,900,209	+		BT3775	0.11	+0.0
4,900,261	-		BT3775	0.19	-2.3
4,900,270	-		BT3775	0.20	-2.3
4,900,274	-		BT3775	0.21	-2.9
4,900,281	+		BT3775	0.22	-1.1
4,900,281	+				+0.0
4,900,282	-		BT3775	0.22	+1.6
4,900,292	+		BT3775	0.24	+0.6
4,900,292	+		BT3775	0.24	-0.7
4,900,311	-		BT3775	0.26	-2.1
4,900,343	+		BT3775	0.31	+0.0
4,900,344	-		BT3775	0.31	-2.8
4,900,414	+		BT3775	0.42	-2.9
4,900,416	+		BT3775	0.42	-3.2
4,900,417	-		BT3775	0.42	-1.6
4,900,501	+		BT3775	0.55	-1.0
4,900,536	-		BT3775	0.60	-0.5
4,900,536	-		BT3775	0.60	-3.8
4,900,537	-		BT3775	0.60	+0.0
4,900,545	-		BT3775	0.61	+0.0
4,900,554	+		BT3775	0.62	-2.5
4,900,555	-		BT3775	0.63	-1.0
4,900,573	-		BT3775	0.65	+0.0
4,900,574	+		BT3775	0.65	+0.6
4,900,575	-		BT3775	0.65	+0.0
4,900,589	+		BT3775	0.68	-2.0
4,900,608	-		BT3775	0.70	+0.6
4,900,630	-		BT3775	0.74	-1.0
4,900,684	+		BT3775	0.82	-1.0
4,900,691	+		BT3775	0.83	-0.6
4,900,783	+				-2.3
4,900,784	-				-3.3
4,900,862	+				-3.4
4,900,863	-				-0.9
4,900,883	-				-1.0
4,900,972	+		BT3776	0.20	-0.2
4,900,976	+		BT3776	0.21	-2.7
4,900,976	+		BT3776	0.21	-1.6
4,900,976	+		BT3776	0.21	-3.1
4,900,977	-		BT3776	0.21	-1.0
4,900,977	-		BT3776	0.21	-3.4
4,900,977	-		BT3776	0.21	-2.6
4,901,042	+		BT3776	0.30	-0.1
4,901,059	+		BT3776	0.33	-2.4
4,901,060	-		BT3776	0.33	+0.6
4,901,264	+		BT3776	0.62	-2.6
4,901,264	+		BT3776	0.62	-0.6
4,901,265	-		BT3776	0.62	-1.0
4,901,268	+		BT3776	0.63	+0.0
4,901,298	+		BT3776	0.67	-1.0
4,901,299	-		BT3776	0.67	+1.0
4,901,303	+		BT3776	0.68	-3.3
4,901,305	+		BT3776	0.68	-3.7
4,901,321	+				-0.6
4,901,335	-		BT3776	0.72	+0.0
4,901,339	-		BT3776	0.73	-1.1
4,901,343	+		BT3776	0.73	-1.5
4,901,410	+		BT3776	0.83	-1.9
4,901,411	-		BT3776	0.83	-0.6
4,901,412	+		BT3776	0.83	+1.3
4,901,412	+		BT3776	0.83	+0.8
4,901,413	-		BT3776	0.83	-0.6
4,901,413	-		BT3776	0.83	-1.0
4,901,517	-				-1.0
4,901,621	+		BT3777	0.11	-1.6
4,901,622	-		BT3777	0.11	-1.0
4,901,636	+		BT3777	0.12	-1.0
4,901,640	-		BT3777	0.13	-0.6
4,901,689	-		BT3777	0.19	-1.0
4,901,698	-		BT3777	0.20	-3.0
4,901,720	-		BT3777	0.23	+1.6
4,901,727	+		BT3777	0.24	-2.8
4,901,742	+		BT3777	0.26	-1.0
4,901,763	-		BT3777	0.28	-2.0
4,901,912	-		BT3777	0.47	-1.8
4,901,928	+		BT3777	0.49	+0.3
4,901,957	-		BT3777	0.53	+0.0
4,901,968	-		BT3777	0.54	+0.0
4,902,047	+		BT3777	0.64	-2.1
4,902,047	+		BT3777	0.64	-2.0
4,902,065	-		BT3777	0.66	-2.6
4,902,069	+		BT3777	0.67	-0.8
4,902,069	+		BT3777	0.67	-0.8
4,902,099	+		BT3777	0.70	-0.3
4,902,123	+		BT3777	0.73	-1.4
4,902,124	-		BT3777	0.73	+0.0
4,902,141	-		BT3777	0.76	+0.0
4,902,161	+		BT3777	0.78	-1.7
4,902,161	+		BT3777	0.78	-1.0
4,902,208	+		BT3777	0.84	+0.4
4,902,209	-		BT3777	0.84	+0.6
4,902,209	-		BT3777	0.84	-1.0
4,902,209	-		BT3777	0.84	+0.6
4,902,233	-		BT3777	0.87	-0.6
4,902,241	+		BT3777	0.88	-1.6
4,902,251	-		BT3777	0.89	-2.3
4,902,281	+				-2.0
4,902,285	+				-0.4
4,902,286	-				+0.0
4,902,353	+				+0.0
4,902,354	-				+0.0
4,902,363	+				+1.0
4,902,363	+				+0.0
4,902,364	-				-1.9
4,902,422	-				-0.3
4,902,462	+				-1.5
4,902,471	+				-2.3
4,902,476	+				-1.0
4,902,488	+				-0.4