Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0464

Experiment: Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0463 and BT0464 are separated by 30 nucleotidesBT0464 and BT0465 are separated by 3 nucleotidesBT0465 and BT0466 are separated by 2 nucleotides BT0463: BT0463 - glucose-1-phosphate thymidylyltransferase (NCBI ptt file), at 573,896 to 574,783 BT0463 BT0464: BT0464 - dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file), at 574,814 to 575,383 BT0464 BT0465: BT0465 - dTDP-4-dehydrorhamnose reductase (NCBI ptt file), at 575,387 to 576,241 BT0465 BT0466: BT0466 - dTDP-glucose 4,6-dehydratase (NCBI ptt file), at 576,244 to 577,356 BT0466 Position (kb) 574 575 576Strain fitness (log2 ratio) -2 -1 0 1 2at 573.880 kb on + strandat 573.977 kb on - strandat 573.999 kb on - strand, within BT0463at 574.031 kb on - strand, within BT0463at 574.062 kb on - strand, within BT0463at 574.288 kb on + strand, within BT0463at 574.352 kb on - strand, within BT0463at 574.430 kb on + strand, within BT0463at 574.435 kb on + strand, within BT0463at 574.462 kb on + strand, within BT0463at 574.549 kb on - strand, within BT0463at 574.549 kb on - strand, within BT0463at 574.664 kb on - strand, within BT0463at 574.691 kb on - strand, within BT0463at 574.720 kb on + strandat 574.746 kb on - strandat 574.791 kb on - strandat 574.823 kb on - strandat 574.840 kb on - strandat 574.948 kb on - strand, within BT0464at 574.964 kb on - strand, within BT0464at 574.964 kb on - strand, within BT0464at 574.992 kb on + strand, within BT0464at 574.992 kb on + strand, within BT0464at 575.041 kb on + strand, within BT0464at 575.107 kb on - strand, within BT0464at 575.107 kb on - strand, within BT0464at 575.107 kb on - strand, within BT0464at 575.128 kb on + strand, within BT0464at 575.376 kb on + strandat 575.410 kb on + strandat 575.461 kb on + strandat 575.470 kb on - strandat 575.527 kb on - strand, within BT0465at 575.547 kb on + strand, within BT0465at 575.582 kb on - strand, within BT0465at 575.624 kb on - strand, within BT0465at 575.680 kb on + strand, within BT0465at 575.710 kb on + strand, within BT0465at 575.716 kb on + strand, within BT0465at 575.744 kb on - strand, within BT0465at 575.840 kb on + strand, within BT0465at 575.894 kb on - strand, within BT0465at 575.936 kb on - strand, within BT0465at 576.005 kb on - strand, within BT0465at 576.005 kb on - strand, within BT0465at 576.005 kb on - strand, within BT0465at 576.008 kb on + strand, within BT0465at 576.148 kb on - strand, within BT0465at 576.155 kb on - strand, within BT0465at 576.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C)
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573,880 + -0.2
573,977 - -2.4
573,999 - BT0463 0.12 -0.1
574,031 - BT0463 0.15 -0.1
574,062 - BT0463 0.19 -0.1
574,288 + BT0463 0.44 -0.1
574,352 - BT0463 0.51 +0.9
574,430 + BT0463 0.60 -0.1
574,435 + BT0463 0.61 -0.4
574,462 + BT0463 0.64 -0.1
574,549 - BT0463 0.74 -0.7
574,549 - BT0463 0.74 -0.7
574,664 - BT0463 0.86 +1.5
574,691 - BT0463 0.90 -2.1
574,720 + -1.1
574,746 - -0.1
574,791 - -2.2
574,823 - -2.7
574,840 - +0.5
574,948 - BT0464 0.24 -0.7
574,964 - BT0464 0.26 -1.1
574,964 - BT0464 0.26 -0.5
574,992 + BT0464 0.31 -2.1
574,992 + BT0464 0.31 -2.5
575,041 + BT0464 0.40 -0.8
575,107 - BT0464 0.51 -1.1
575,107 - BT0464 0.51 -1.7
575,107 - BT0464 0.51 -1.4
575,128 + BT0464 0.55 -2.1
575,376 + -1.7
575,410 + -0.8
575,461 + -0.1
575,470 - -0.7
575,527 - BT0465 0.16 -1.7
575,547 + BT0465 0.19 +0.9
575,582 - BT0465 0.23 +0.6
575,624 - BT0465 0.28 -0.6
575,680 + BT0465 0.34 -0.7
575,710 + BT0465 0.38 -1.1
575,716 + BT0465 0.38 -1.4
575,744 - BT0465 0.42 -0.7
575,840 + BT0465 0.53 -1.1
575,894 - BT0465 0.59 -0.1
575,936 - BT0465 0.64 -0.1
576,005 - BT0465 0.72 -1.4
576,005 - BT0465 0.72 +0.5
576,005 - BT0465 0.72 -1.9
576,008 + BT0465 0.73 -0.1
576,148 - BT0465 0.89 +1.9
576,155 - BT0465 0.90 -2.0
576,340 - +0.4

Or see this region's nucleotide sequence