Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2213

Experiment: dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C)
2,780,379	-		BT2212	0.23	-1.3
2,780,380	+		BT2212	0.23	-2.2
2,780,424	-		BT2212	0.27	-1.0
2,780,436	+		BT2212	0.29	+1.0
2,780,436	+		BT2212	0.29	-0.3
2,780,443	+		BT2212	0.29	-0.6
2,780,524	+		BT2212	0.38	+0.0
2,780,538	+		BT2212	0.39	-0.7
2,780,538	+		BT2212	0.39	-1.0
2,780,582	+		BT2212	0.43	-1.0
2,780,676	+		BT2212	0.53	-2.8
2,780,681	+		BT2212	0.54	-1.0
2,780,682	-		BT2212	0.54	-1.6
2,780,698	-		BT2212	0.55	-0.8
2,780,719	+		BT2212	0.58	-3.0
2,780,720	-		BT2212	0.58	-0.7
2,780,795	-		BT2212	0.65	+0.0
2,780,848	-		BT2212	0.71	+0.6
2,780,987	-		BT2212	0.85	-1.8
2,781,132	+				-0.6
2,781,132	+				+2.0
2,781,136	+				-0.9
2,781,146	-				-0.6
2,781,146	-				-2.0
2,781,180	-				+0.0
2,781,367	+		BT2213	0.17	-3.1
2,781,438	-		BT2213	0.23	-1.2
2,781,503	+		BT2213	0.28	+0.7
2,781,503	+		BT2213	0.28	-0.2
2,781,541	+		BT2213	0.31	-0.4
2,781,542	-		BT2213	0.31	-0.8
2,781,617	+		BT2213	0.37	-0.4
2,781,617	+		BT2213	0.37	+1.0
2,781,619	+				+0.0
2,781,676	+		BT2213	0.42	-1.1
2,781,787	+		BT2213	0.50	+0.0
2,781,788	-		BT2213	0.51	-0.3
2,781,788	-		BT2213	0.51	+0.2
2,781,968	-		BT2213	0.65	+0.0
2,782,034	-		BT2213	0.70	+0.0
2,782,055	+		BT2213	0.71	-1.0
2,782,055	+		BT2213	0.71	-0.6
2,782,100	+		BT2213	0.75	-0.7
2,782,100	+		BT2213	0.75	-1.3
2,782,101	-		BT2213	0.75	-0.8
2,782,101	-		BT2213	0.75	-1.0
2,782,101	-		BT2213	0.75	-1.6
2,782,134	+		BT2213	0.78	-2.0
2,782,134	+		BT2213	0.78	-0.9
2,782,135	-		BT2213	0.78	-0.7
2,782,135	-		BT2213	0.78	-1.0
2,782,184	+		BT2213	0.82	+1.0
2,782,238	+		BT2213	0.86	-0.3
2,782,239	-		BT2213	0.86	+0.0
2,782,330	-				-1.6
2,782,356	+				+0.0
2,782,560	+		BT2214	0.24	-2.1
2,782,576	+		BT2214	0.26	+0.0
2,782,577	-		BT2214	0.26	+0.8
2,782,578	+		BT2214	0.27	-1.8
2,782,742	-		BT2214	0.53	-1.0
2,782,763	+		BT2214	0.57	-0.9
2,782,764	-		BT2214	0.57	-1.2
2,782,764	-		BT2214	0.57	+1.0
2,782,781	-				+1.0
2,782,813	+		BT2214	0.65	-0.7
2,782,814	-		BT2214	0.65	+1.6
2,782,826	+		BT2214	0.67	-3.0
2,782,827	-		BT2214	0.67	+0.0
2,782,827	-		BT2214	0.67	-2.0
2,782,827	-		BT2214	0.67	-1.3
2,782,830	-		BT2214	0.67	-1.6
2,782,832	+		BT2214	0.68	-1.2
2,782,833	-		BT2214	0.68	-0.5
2,782,934	+		BT2214	0.84	-1.6
2,782,950	+		BT2214	0.87	-1.0
2,783,031	+				-1.4
2,783,041	+				+0.0
2,783,045	+				-0.8
2,783,045	+				-1.5
2,783,045	+				-1.6
2,783,051	+				-1.0
2,783,067	+				-2.2
2,783,089	+				-1.0
2,783,094	+				-0.9
2,783,098	+				+1.4
2,783,099	-				-2.0
2,783,179	+		BT2215	0.14	-3.3
2,783,180	-		BT2215	0.14	-0.1
2,783,185	-		BT2215	0.14	-1.3
2,783,209	-		BT2215	0.17	+0.0
2,783,211	-		BT2215	0.17	-1.0
2,783,249	-		BT2215	0.21	-2.0
2,783,261	+		BT2215	0.23	+0.0
2,783,283	-		BT2215	0.25	-2.0
2,783,296	-		BT2215	0.26	+0.6
2,783,312	-		BT2215	0.28	-1.0
2,783,316	+		BT2215	0.29	-1.7
2,783,316	+		BT2215	0.29	-1.0
2,783,316	+		BT2215	0.29	-0.8
2,783,316	+		BT2215	0.29	-1.6
2,783,316	+		BT2215	0.29	-0.4
2,783,317	-		BT2215	0.29	+0.0
2,783,322	+		BT2215	0.29	+1.6
2,783,323	-		BT2215	0.29	+1.6
2,783,323	-		BT2215	0.29	-1.2
2,783,323	-		BT2215	0.29	+1.0
2,783,409	+		BT2215	0.38	+0.0