Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2450

Experiment: dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C)
3,067,105	+				-1.0
3,067,134	+				-1.0
3,067,192	-				-0.9
3,067,206	-				-1.3
3,067,226	+				-1.2
3,067,236	+				-0.0
3,067,238	+				-1.2
3,067,239	-				-1.2
3,067,239	-				-0.7
3,067,239	-				-2.1
3,067,282	+				-1.0
3,067,307	-				-0.0
3,067,373	+				-0.0
3,067,375	+				+1.6
3,067,399	-				-0.7
3,067,436	+				-1.0
3,067,451	+				-0.6
3,067,451	+				+0.3
3,067,479	-				-0.8
3,067,535	+				-1.4
3,067,535	+				-0.9
3,067,536	-				+1.0
3,067,536	-				-1.6
3,067,562	-				-2.0
3,067,562	-				-0.5
3,067,562	-				+1.8
3,067,563	+				-0.4
3,067,564	-				-2.6
3,067,564	-				-0.0
3,067,564	-				-0.0
3,067,567	+				-0.0
3,067,568	-				-1.0
3,067,601	-				-1.6
3,067,601	-				-1.8
3,067,601	-				-1.4
3,067,603	+				-0.0
3,067,604	-				-0.3
3,067,604	-				+0.2
3,067,604	-				-0.0
3,067,605	+				-2.3
3,067,606	-				-0.0
3,067,670	+				-1.0
3,067,857	+				+1.6
3,067,886	+				-1.5
3,067,894	-				-1.0
3,067,970	-				-2.4
3,067,970	-				-0.0
3,067,978	+				-0.0
3,067,979	-				-2.0
3,067,979	-				+1.0
3,068,001	-				-0.0
3,068,056	-				-2.3
3,068,056	-				-1.6
3,068,077	+				+0.6
3,068,194	-		BT2450	0.12	-1.6
3,068,236	-		BT2450	0.17	-1.7
3,068,239	-		BT2450	0.17	-3.0
3,068,270	+		BT2450	0.21	-0.0
3,068,271	-		BT2450	0.21	-1.4
3,068,282	+		BT2450	0.22	-2.8
3,068,332	-		BT2450	0.28	-0.0
3,068,351	+		BT2450	0.30	-1.0
3,068,351	+		BT2450	0.30	-1.8
3,068,352	-		BT2450	0.31	-1.2
3,068,352	-		BT2450	0.31	-2.0
3,068,379	-		BT2450	0.34	-0.7
3,068,385	-		BT2450	0.35	-1.6
3,068,401	-		BT2450	0.36	-1.0
3,068,406	+		BT2450	0.37	-0.0
3,068,406	+		BT2450	0.37	+1.0
3,068,452	-		BT2450	0.42	-1.9
3,068,466	-		BT2450	0.44	-0.0
3,068,606	-		BT2450	0.61	-2.0
3,068,622	+		BT2450	0.63	-1.1
3,068,625	-		BT2450	0.63	+1.0
3,068,670	-		BT2450	0.68	-1.0
3,068,670	-		BT2450	0.68	-1.9
3,068,674	+		BT2450	0.69	-0.7
3,068,695	-		BT2450	0.71	-1.0
3,068,758	+				-2.4
3,068,759	-		BT2450	0.79	-2.4
3,068,795	+		BT2450	0.83	-0.0
3,068,796	-		BT2450	0.83	-2.0
3,068,796	-		BT2450	0.83	-1.8
3,068,910	+				-1.6
3,069,110	+		BT2451	0.11	-1.1
3,069,181	+		BT2451	0.17	-1.0
3,069,181	+		BT2451	0.17	-1.0
3,069,201	+		BT2451	0.18	-1.4
3,069,201	+		BT2451	0.18	-0.0
3,069,202	-		BT2451	0.18	-1.7
3,069,209	+		BT2451	0.19	-0.4
3,069,209	+		BT2451	0.19	+1.6
3,069,209	+		BT2451	0.19	-1.6
3,069,209	+		BT2451	0.19	-1.2
3,069,209	+		BT2451	0.19	-0.9
3,069,229	-		BT2451	0.20	-1.8
3,069,280	+		BT2451	0.24	-0.0
3,069,297	-		BT2451	0.26	-0.0
3,069,298	-		BT2451	0.26	-2.3
3,069,306	-		BT2451	0.26	-2.4
3,069,309	-		BT2451	0.27	-0.6
3,069,309	-		BT2451	0.27	-1.6
3,069,341	-		BT2451	0.29	-0.0
3,069,341	-		BT2451	0.29	-0.3
3,069,358	-		BT2451	0.31	-0.0
3,069,417	+		BT2451	0.35	-0.6
3,069,424	+		BT2451	0.36	-0.6
3,069,453	-		BT2451	0.38	-0.7
3,069,460	+		BT2451	0.38	-1.1
3,069,482	+		BT2451	0.40	+0.6
3,069,495	-		BT2451	0.41	-0.7
3,069,495	-		BT2451	0.41	-0.0
3,069,499	-		BT2451	0.42	-3.0
3,069,502	+		BT2451	0.42	-0.0
3,069,503	-		BT2451	0.42	-2.2
3,069,503	-		BT2451	0.42	-0.0
3,069,538	+		BT2451	0.45	-0.7
3,069,582	-		BT2451	0.48	-0.0
3,069,599	+		BT2451	0.49	-0.0
3,069,600	-		BT2451	0.49	-0.8
3,069,600	-		BT2451	0.49	-1.4
3,069,601	+		BT2451	0.49	-0.5
3,069,602	-		BT2451	0.50	-1.3
3,069,643	+		BT2451	0.53	-1.0
3,069,644	-		BT2451	0.53	-3.0
3,069,652	+		BT2451	0.53	-0.2
3,069,653	-		BT2451	0.54	-0.0
3,069,697	-		BT2451	0.57	-1.8
3,069,697	-		BT2451	0.57	-1.6
3,069,698	+		BT2451	0.57	-1.4
3,069,699	-		BT2451	0.57	-2.3
3,069,699	-		BT2451	0.57	-2.8
3,069,699	-		BT2451	0.57	-1.0
3,069,848	+		BT2451	0.69	-0.3
3,069,891	-				-1.0
3,069,892	+		BT2451	0.72	-2.0
3,069,892	+		BT2451	0.72	-1.7
3,069,900	-		BT2451	0.73	-0.3
3,069,903	-		BT2451	0.73	-0.4
3,069,925	+		BT2451	0.75	+0.4
3,069,926	-		BT2451	0.75	-2.0