Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36315 and BPHYT_RS36320 are separated by 2 nucleotides BPHYT_RS36320 and BPHYT_RS36325 are separated by 77 nucleotides
BPHYT_RS36315: BPHYT_RS36315 - CagE TrbE VirB component of type IV transporter system, at 74,136 to 76,685
_RS36315
BPHYT_RS36320: BPHYT_RS36320 - type IV secretion system family protein, at 76,688 to 77,392
_RS36320
BPHYT_RS36325: BPHYT_RS36325 - TrbL/VirB6 plasmid conjugal transfer protein, at 77,470 to 78,468
_RS36325
Position (kb) 76
77
78 Strain fitness (log2 ratio) -2
-1
0
1 at 75.738 kb on + strand, within BPHYT_RS36315 at 75.781 kb on - strand, within BPHYT_RS36315 at 75.915 kb on - strand, within BPHYT_RS36315 at 76.054 kb on - strand, within BPHYT_RS36315 at 76.173 kb on - strand, within BPHYT_RS36315 at 76.182 kb on - strand, within BPHYT_RS36315 at 76.182 kb on - strand, within BPHYT_RS36315 at 76.326 kb on - strand, within BPHYT_RS36315 at 76.432 kb on - strand at 76.535 kb on - strand at 77.127 kb on - strand, within BPHYT_RS36320 at 77.127 kb on - strand, within BPHYT_RS36320 at 77.145 kb on - strand, within BPHYT_RS36320 at 77.713 kb on + strand, within BPHYT_RS36325 at 77.775 kb on + strand, within BPHYT_RS36325 at 77.805 kb on + strand, within BPHYT_RS36325 at 77.806 kb on - strand, within BPHYT_RS36325 at 78.022 kb on - strand, within BPHYT_RS36325 at 78.083 kb on - strand, within BPHYT_RS36325 at 78.085 kb on + strand, within BPHYT_RS36325 at 78.086 kb on - strand, within BPHYT_RS36325 at 78.137 kb on + strand, within BPHYT_RS36325 at 78.148 kb on + strand, within BPHYT_RS36325 at 78.148 kb on + strand, within BPHYT_RS36325 at 78.283 kb on + strand, within BPHYT_RS36325 at 78.283 kb on + strand, within BPHYT_RS36325
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 75,738 + BPHYT_RS36315 0.63 -0.0 75,781 - BPHYT_RS36315 0.65 +0.5 75,915 - BPHYT_RS36315 0.70 -0.3 76,054 - BPHYT_RS36315 0.75 -0.2 76,173 - BPHYT_RS36315 0.80 +0.3 76,182 - BPHYT_RS36315 0.80 -1.1 76,182 - BPHYT_RS36315 0.80 -0.9 76,326 - BPHYT_RS36315 0.86 +0.0 76,432 - -0.4 76,535 - -0.7 77,127 - BPHYT_RS36320 0.62 +0.3 77,127 - BPHYT_RS36320 0.62 +0.1 77,145 - BPHYT_RS36320 0.65 -1.2 77,713 + BPHYT_RS36325 0.24 +1.0 77,775 + BPHYT_RS36325 0.31 +0.6 77,805 + BPHYT_RS36325 0.34 -0.1 77,806 - BPHYT_RS36325 0.34 -0.4 78,022 - BPHYT_RS36325 0.55 -0.7 78,083 - BPHYT_RS36325 0.61 +0.5 78,085 + BPHYT_RS36325 0.62 +0.8 78,086 - BPHYT_RS36325 0.62 -1.4 78,137 + BPHYT_RS36325 0.67 +0.4 78,148 + BPHYT_RS36325 0.68 +0.5 78,148 + BPHYT_RS36325 0.68 -0.4 78,283 + BPHYT_RS36325 0.81 +0.0 78,283 + BPHYT_RS36325 0.81 -2.0
Or see this region's nucleotide sequence