Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35850

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35845 and BPHYT_RS35850 are separated by 8 nucleotidesBPHYT_RS35850 and BPHYT_RS35855 are separated by 6 nucleotides BPHYT_RS35845: BPHYT_RS35845 - hypothetical protein, at 2,404 to 3,792 _RS35845 BPHYT_RS35850: BPHYT_RS35850 - hypothetical protein, at 3,801 to 4,601 _RS35850 BPHYT_RS35855: BPHYT_RS35855 - type II secretion system protein E, at 4,608 to 6,626 _RS35855 Position (kb) 3 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2.823 kb on - strand, within BPHYT_RS35845at 2.920 kb on - strand, within BPHYT_RS35845at 2.950 kb on + strand, within BPHYT_RS35845at 2.951 kb on - strand, within BPHYT_RS35845at 2.951 kb on - strand, within BPHYT_RS35845at 3.055 kb on + strand, within BPHYT_RS35845at 3.056 kb on - strand, within BPHYT_RS35845at 3.090 kb on + strand, within BPHYT_RS35845at 3.110 kb on - strand, within BPHYT_RS35845at 3.121 kb on + strand, within BPHYT_RS35845at 3.122 kb on - strand, within BPHYT_RS35845at 3.210 kb on + strand, within BPHYT_RS35845at 3.210 kb on + strand, within BPHYT_RS35845at 3.211 kb on - strand, within BPHYT_RS35845at 3.260 kb on - strand, within BPHYT_RS35845at 3.358 kb on - strand, within BPHYT_RS35845at 3.358 kb on - strand, within BPHYT_RS35845at 3.358 kb on - strand, within BPHYT_RS35845at 3.358 kb on - strandat 3.361 kb on + strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.362 kb on - strand, within BPHYT_RS35845at 3.404 kb on + strand, within BPHYT_RS35845at 3.526 kb on - strand, within BPHYT_RS35845at 3.799 kb on + strandat 3.995 kb on + strand, within BPHYT_RS35850at 4.077 kb on - strandat 4.308 kb on + strand, within BPHYT_RS35850at 4.308 kb on + strand, within BPHYT_RS35850at 4.318 kb on - strand, within BPHYT_RS35850at 4.519 kb on + strand, within BPHYT_RS35850at 4.519 kb on + strand, within BPHYT_RS35850at 4.520 kb on - strand, within BPHYT_RS35850at 4.599 kb on + strandat 4.599 kb on + strandat 4.599 kb on + strandat 4.690 kb on + strandat 5.222 kb on + strand, within BPHYT_RS35855at 5.223 kb on - strand, within BPHYT_RS35855at 5.261 kb on - strand, within BPHYT_RS35855at 5.293 kb on - strand, within BPHYT_RS35855at 5.375 kb on + strand, within BPHYT_RS35855at 5.376 kb on - strand, within BPHYT_RS35855at 5.378 kb on - strand, within BPHYT_RS35855at 5.390 kb on + strand, within BPHYT_RS35855at 5.390 kb on + strand, within BPHYT_RS35855at 5.391 kb on - strand, within BPHYT_RS35855

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
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2,823 - BPHYT_RS35845 0.30 -1.0
2,920 - BPHYT_RS35845 0.37 -0.7
2,950 + BPHYT_RS35845 0.39 -1.0
2,951 - BPHYT_RS35845 0.39 -0.9
2,951 - BPHYT_RS35845 0.39 +0.6
3,055 + BPHYT_RS35845 0.47 -0.2
3,056 - BPHYT_RS35845 0.47 +0.5
3,090 + BPHYT_RS35845 0.49 +1.6
3,110 - BPHYT_RS35845 0.51 -0.8
3,121 + BPHYT_RS35845 0.52 -1.4
3,122 - BPHYT_RS35845 0.52 +0.8
3,210 + BPHYT_RS35845 0.58 +0.7
3,210 + BPHYT_RS35845 0.58 +2.4
3,211 - BPHYT_RS35845 0.58 -0.3
3,260 - BPHYT_RS35845 0.62 +0.0
3,358 - BPHYT_RS35845 0.69 +0.5
3,358 - BPHYT_RS35845 0.69 +0.5
3,358 - BPHYT_RS35845 0.69 +1.1
3,358 - +2.6
3,361 + BPHYT_RS35845 0.69 -2.0
3,362 - BPHYT_RS35845 0.69 +0.5
3,362 - BPHYT_RS35845 0.69 -0.6
3,362 - BPHYT_RS35845 0.69 -0.0
3,362 - BPHYT_RS35845 0.69 -0.6
3,362 - BPHYT_RS35845 0.69 -2.3
3,362 - BPHYT_RS35845 0.69 +0.6
3,362 - BPHYT_RS35845 0.69 +0.3
3,404 + BPHYT_RS35845 0.72 -0.3
3,526 - BPHYT_RS35845 0.81 -2.1
3,799 + -2.4
3,995 + BPHYT_RS35850 0.24 +1.1
4,077 - -1.2
4,308 + BPHYT_RS35850 0.63 -1.0
4,308 + BPHYT_RS35850 0.63 -1.2
4,318 - BPHYT_RS35850 0.65 +0.2
4,519 + BPHYT_RS35850 0.90 -3.2
4,519 + BPHYT_RS35850 0.90 -0.3
4,520 - BPHYT_RS35850 0.90 -0.4
4,599 + +0.2
4,599 + -0.2
4,599 + +0.0
4,690 + -0.6
5,222 + BPHYT_RS35855 0.30 +0.3
5,223 - BPHYT_RS35855 0.30 -0.4
5,261 - BPHYT_RS35855 0.32 +0.2
5,293 - BPHYT_RS35855 0.34 -0.7
5,375 + BPHYT_RS35855 0.38 +1.3
5,376 - BPHYT_RS35855 0.38 -0.0
5,378 - BPHYT_RS35855 0.38 -0.5
5,390 + BPHYT_RS35855 0.39 -0.5
5,390 + BPHYT_RS35855 0.39 +0.5
5,391 - BPHYT_RS35855 0.39 +1.4

Or see this region's nucleotide sequence