Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35720

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,603,977	+				-1.3
3,604,027	-				-0.9
3,604,053	+				+0.8
3,604,205	-				+1.1
3,604,718	+				-0.4
3,604,755	-				+0.4
3,604,857	+		BPHYT_RS35720	0.15	-0.1
3,604,858	-		BPHYT_RS35720	0.15	+0.9
3,604,858	-		BPHYT_RS35720	0.15	-2.8
3,604,858	-		BPHYT_RS35720	0.15	-0.2
3,604,858	-		BPHYT_RS35720	0.15	+0.2
3,605,055	+		BPHYT_RS35720	0.44	-0.5
3,605,055	+		BPHYT_RS35720	0.44	-0.1
3,605,419	-				+0.1
3,605,419	-				+1.5
3,605,977	-		BPHYT_RS35725	0.60	-0.4
3,606,046	-		BPHYT_RS35725	0.68	+0.4
3,606,131	+		BPHYT_RS35725	0.78	-1.2
3,606,312	+				+1.0
3,606,313	-				-0.1
3,606,313	-				-1.5
3,606,313	-				-1.7
3,606,313	-				-0.1
3,606,313	-				-0.7
3,606,335	+				+0.4
3,606,335	+				+0.0
3,606,335	+				+0.5
3,606,335	+				-0.3
3,606,336	-				-0.2
3,606,336	-				-0.6