Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35645

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,588,923	-		BPHYT_RS35640	0.34	+0.5
3,588,923	-		BPHYT_RS35640	0.34	+0.7
3,588,983	-		BPHYT_RS35640	0.47	-0.8
3,589,021	-		BPHYT_RS35640	0.56	+1.2
3,589,081	-		BPHYT_RS35640	0.69	+1.5
3,589,103	-		BPHYT_RS35640	0.74	-1.1
3,589,103	-		BPHYT_RS35640	0.74	+0.6
3,589,206	-				-1.5
3,589,435	+				+2.9
3,589,653	+				-0.0
3,589,717	+				+1.4
3,589,945	+				+1.3
3,589,946	-				+0.9
3,590,539	+		BPHYT_RS35645	0.60	-1.6
3,590,561	+		BPHYT_RS35645	0.62	+1.7
3,590,562	-		BPHYT_RS35645	0.62	-0.2
3,590,652	-		BPHYT_RS35645	0.70	+0.9
3,590,765	+		BPHYT_RS35645	0.80	-0.2
3,590,787	-		BPHYT_RS35645	0.82	-0.8
3,590,788	+		BPHYT_RS35645	0.82	-0.1
3,590,996	+				-0.3
3,591,076	+				+0.2
3,591,121	-				+0.3
3,591,265	+		BPHYT_RS35650	0.22	+0.2
3,591,297	+		BPHYT_RS35650	0.27	+4.1
3,591,298	-		BPHYT_RS35650	0.27	-1.0
3,591,492	+		BPHYT_RS35650	0.56	+0.3
3,591,588	+		BPHYT_RS35650	0.70	+0.1
3,591,953	+				-1.6
3,591,954	-				+0.3
3,591,963	-				+0.3