Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35600

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,578,870	+				-0.6
3,578,871	-				+0.4
3,578,871	-				+0.8
3,578,871	-				-1.8
3,579,120	+				+2.4
3,579,123	-				-0.1
3,579,261	+				+1.7
3,579,453	+		BPHYT_RS35595	0.57	-1.5
3,579,624	+				-1.0
3,579,662	+				+0.7
3,579,730	+				+1.4
3,579,915	-		BPHYT_RS35600	0.14	-0.2
3,579,915	-		BPHYT_RS35600	0.14	-0.7
3,579,937	-				-0.6
3,580,143	+		BPHYT_RS35600	0.30	-0.7
3,580,447	+		BPHYT_RS35600	0.51	-0.5
3,580,781	+		BPHYT_RS35600	0.75	+1.8
3,580,781	+		BPHYT_RS35600	0.75	-0.3
3,580,782	-		BPHYT_RS35600	0.75	-1.6
3,580,793	-		BPHYT_RS35600	0.76	+0.3
3,580,886	+		BPHYT_RS35600	0.82	-0.6
3,580,930	+		BPHYT_RS35600	0.85	+0.3
3,580,930	+		BPHYT_RS35600	0.85	-0.4
3,580,930	+		BPHYT_RS35600	0.85	-1.7
3,580,931	-		BPHYT_RS35600	0.85	-1.6
3,581,069	-				-1.2
3,581,117	+				-1.2
3,581,173	+				-1.2
3,581,173	+				+0.4
3,581,173	+				-1.0
3,581,174	-				+1.3
3,581,592	+		BPHYT_RS35605	0.38	+0.6
3,581,958	+		BPHYT_RS35605	0.77	+0.2
3,581,958	+		BPHYT_RS35605	0.77	+0.1
3,582,058	-		BPHYT_RS35605	0.87	+0.7