Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35390

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,538,759	-		BPHYT_RS35385	0.30	-0.3
3,538,827	-		BPHYT_RS35385	0.40	-2.3
3,539,133	+		BPHYT_RS35385	0.81	-1.5
3,539,134	-		BPHYT_RS35385	0.81	+0.5
3,539,288	-				-1.0
3,539,288	-				+0.2
3,539,304	-				-0.3
3,539,312	+				+1.2
3,539,313	-				+1.3
3,539,436	-				+0.7
3,539,674	+		BPHYT_RS35390	0.19	-1.3
3,539,674	+		BPHYT_RS35390	0.19	-1.9
3,539,895	-		BPHYT_RS35390	0.36	-1.5
3,540,069	+		BPHYT_RS35390	0.50	-0.8
3,540,069	+		BPHYT_RS35390	0.50	-0.6
3,540,141	-		BPHYT_RS35390	0.55	-0.1
3,540,338	+		BPHYT_RS35390	0.70	+0.1
3,540,339	-		BPHYT_RS35390	0.70	-0.8
3,540,934	+		BPHYT_RS35395	0.22	-0.2
3,540,934	+		BPHYT_RS35395	0.22	-0.6
3,540,935	-		BPHYT_RS35395	0.22	-0.5
3,541,327	+		BPHYT_RS35395	0.67	-1.5
3,541,617	+				+0.8